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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGGCTGTTGCCGATGATTTGAACTCAGTGCTTACAACACCCTGTGAGTGGTTCATATGTGACGATGACCGGACTGGAACAAGATTCTTCGTCATTCAGgttgaagaaaacccaaaactctttcttcatttcatatttatttgattgatttgttcatgttttgtgaatctttggcattttcctctctgattttactcaaaaacttttggtgtcatattttaatgtgcag

Basic information

species Vitis vinifera
transcript Vv07s0005g01240.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g01240.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G01770.1 (Glycine max), 5'ss of exon 2
GCAGGCTGTTGCCGATGATTTGAACTCAGTGCTTACAACACCCTGTGAGTGGTTCATATGTGACGATGACCGGACTGGAACAAGATTCTTCGTCATTCAGgttgaagaaaacccaaaactctttcttcatttcatatttatttgattgatttgttcatgttttgtgaatctttggcattttcctctctgattttactcaaaaacttttggtgtcatattttaatgtgcag
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GCAGGCTGTTGCAGATGATCTGAACTCTGCACATTCAACACCCTGTGAATGGTTTGTCTGTGATGATGACCAGAGTGCTACAAGGTTTTTCGTTATTCAGgtgg--ggaaacttaattgagtacatactcttgctttttgcactat--aattgtacttgttggttgcagcttgcaagtttgc---tgtaatttg---cgaaaatttgtga--------------------