Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGCAGTCCTCCAATCAATGAAGTTATACAATCTGGTGTTGTTCCTCGCTTGGTTGAGTTCCTTGGCAGGGATGACTTCCCACAGCTTCAGgtttgaactaggctgtttattcctgtttttagatccatttaaatgaagcatttatatgctcctcttttgttttgttatttactgatttgaattttatttag

Basic information

species Vitis vinifera
transcript Vv07s0005g01100.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g01100.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT4G02150.1 (Arabidopsis thaliana), 5'ss of exon 3
AACGCAGTCCTCCAATCAATGAAGTTATACAATCTGGTGTTGTTCCTCGCTTGGTTGAGTTCCTTGGCAGGGATGACTTCCCACAGCTTCAGgtttgaactaggctgtttattcctgtttttagatccatttaaatgaagcatttatatgctcctctt---ttg-ttttgttatttactgatttgaattttatttag
|||  | |||||| |||||||||||| ||||||||||||||||||||||  | ||  |||| |||  |||||||||||||||  | ||||||||  |    || |||        | ||||| |||  ||| | |   |  | ||  |||    | ||   ||| ||||| | ||||||  |   ||| |  |||||
AACAAAATCCTCCTATCAATGAAGTTGTACAATCTGGTGTTGTTCCTCGTGTTGTGAAGTTTCTTTCCAGGGATGACTTCCCCAAACTTCAGgtgagtcgcag-ctgcagtcgtttttttttggatatattgatagttactagtttgatgtatttgttaacttgcttttgctgtttacttctgc-aatgtgttttag

upper sequence: Vv07s0005g01100.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G02690.2 (Arabidopsis thaliana), 5'ss of exon 3
AACGCAGTCCTCCAATCAATGAAGTTATACAATCTGGTGTTGTTCCTCGCTTGGTTGAGTTCCTTGGCAGGGATGACTTCCCACAGCTTCAGgtttgaactaggctgtttattcctgtttttagatccatttaaatgaagc-atttatatgctcct--cttttgttttgttatttactgatttgaattttatttag
| || | ||||||||||||||||||| | ||||||||||||||||||| | | ||  | || |||  ||||||||||||| | || ||||||||  || || | ||     ||| | | | ||  |  |  |   ||     ||| |||||||  |  |||||| | | |  ||| ||  | | | | |       
AGCGAAATCCTCCAATCAATGAAGTTGTTCAATCTGGTGTTGTTCCTCACATTGTGCAATTTCTTTCCAGGGATGACTTCACTCAACTTCAGgt--gagcttgcct-----ttcttatatctaagtgtagcttggtgctttgattcatatgctgatggcttttgctgtttgctttgcttgtataactatag-----