1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGTAGCTGCTGAAACTGCAGCTGCTCTTGCTGCTGCTTCAGTGGTCTTCAGAAGAAGTGACCCTACATACTCCAAGCTTCTCATCAGGAGAGCTATTAGGgtaagatttattccttatacttttaaatacagaaaaaatgttttgtaaaaacaatggtatctcaacacagatttattttcagcccccaatatccttgagacttgatttttttttttttaatctttctgggtacag
species | Vitis vinifera |
transcript | Vv07s0005g00740.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAAGAAGTGACCCTACATACTCCAAGCTTCTCATCAGGAGAGCTATTAGG GTGTTTCAGTTTGCTGACAGGTACAGAGGAGCATACAGCAATGGATTGAAAEST: gi|351029054|gb|FQ435254.1|FQ435254
genomic: GAAGAAGTGACCCTACATACTCCAAGCTTCTCATCAGGAGAGCTATTAGGgtaagattta ... ctgggtacagGTGTTTCAGTTTGCTGACAGGTACAGAGGAGCATACAGCAATGGATTGAAA
EST: GAAGAAGTGACCCTACATACTCCAAGCTTCTCATCAGGAGAGCTATTAGG GTGTTTCAGTTTGCTGACAGGTACAGAGGAGCATACAGCAATGGATTGAAAEST: gi|161715260|gb|FC065809.1|FC065809
genomic: GAAGAAGTGACCCTACATACTCCAAGCTTCTCATCAGGAGAGCTATTAGGgtaagattta ... ctgggtacagGTGTTTCAGTTTGCTGACAGGTACAGAGGAGCATACAGCAATGGATTGAAA
EST: GAAGAAGTGACCCTACATACTCCAAGCTTCTCATCAGGAGAGCTATTAGG GTGTTTCAGTTTGCTGACAGGTACAGAGGAGCATACAGCAATGGATTGAAAEST: gi|110700767|gb|EE077711.1|EE077711
genomic: GAAGAAGTGACCCTACATACTCCAAGCTTCTCATCAGGAGAGCTATTAGGgtaagattta ... ctgggtacagGTGTTTCAGTTTGCTGACAGGTACAGAGGAGCATACAGCAATGGATTGAAA
EST: GAAGAAGTGACCCTACATACTCCAAGCTTCTCATCAGGAGAGCTATTAGG GTGTTTCAGTTTGCTGACAGGTACAGAGGAGCATACAGCAATGGATTGAAAEST: gi|110687298|gb|EE064584.1|EE064584
genomic: GAAGAAGTGACCCTACATACTCCAAGCTTCTCATCAGGAGAGCTATTAGGgtaagattta ... ctgggtacagGTGTTTCAGTTTGCTGACAGGTACAGAGGAGCATACAGCAATGGATTGAAA
EST: CTACATACTCCAAGCTTCTCATCAGGAGAGCTATTAGG GTGTTTCAGTTTGCTGACAGGTACAGAGGAGCATACAGCAATGGATTGAAAEST: gi|351043975|gb|FQ431406.1|FQ431406
genomic: CTACATACTCCAAGCTTCTCATCAGGAGAGCTATTAGGgtaagattta ... ctgggtacagGTGTTTCAGTTTGCTGACAGGTACAGAGGAGCATACAGCAATGGATTGAAA
EST: GAAGAAGTGACCCTACATACTCCAAGCTTCTCATCAGGAGAGCTATTAGG GTGTTTCAGTTTGCTGACAGGTACAGAGGAGCATACAGCAATGGATTGAAAEST: gi|110701944|gb|EE080092.1|EE080092
genomic: GAAGAAGTGACCCTACATACTCCAAGCTTCTCATCAGGAGAGCTATTAGGgtaagattta ... ctgggtacagGTGTTTCAGTTTGCTGACAGGTACAGAGGAGCATACAGCAATGGATTGAAA
EST: GCTTCTCATCAGGAGAGCTATTAGG GTGTTTCAGTTTGCTGACAGGTACAGAGGAGCATACAGCAATGGATTGAAAEST: gi|71877408|gb|DT026463.1|DT026463
genomic: GCTTCTCATCAGGAGAGCTATTAGGgtaagattta ... ctgggtacagGTGTTTCAGTTTGCTGACAGGTACAGAGGAGCATACAGCAATGGATTGAAA
EST: GAAGAAGTGACCCTACATACTCCAAGCTTCTCATCAGGAGAGCTATTAGG GTGTTTCAGTTTGCTGACAGGTACAGAGGAGCATACAGCAATGGATTGAAA
genomic: GAAGAAGTGACCCTACATACTCCAAGCTTCTCATCAGGAGAGCTATTAGGgtaagattta ... ctgggtacagGTGTTTCAGTTTGCTGACAGGTACAGAGGAGCATACAGCAATGGATTGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTAGCTGCTGAAACTGCAGCTGCTCTTGCTGCTGCTTCAGTGGTCTTCAGAAGAAGTGACCCTACATACTCCAAGCTTCTCATCAGGAGAGCTATTAGGgtaagatttattccttatacttttaaatacagaaaaaatgttttgtaaaaacaatggtatctcaacacagatttattttcagcccccaatatccttgagacttgatttttttttttttaatctttctgggtacag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT