1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CTGTGTATTTTGCTTTTGAGGATGACAATATTGATGATGTGTTGACCGACATCAAGAGGAATGATGCTACTAGTCAGCCTGCTACTGCAACTACTGGCGGgttagttgataattttacaataaaaagaagatttccaaactctatataaaattatatccactagaaggtaaactacaaagtagtatgattatgattattg...
species | Vitis vinifera |
transcript | Vv06s0080g00880.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATCAAGAGGAATGATGCTACTAGTCAGCCTGCTACTGCAACTACTGGCGG ATACAAGCTTGTTGTCTCAGCACCAGAACCTAAGAGA-TTGTATCTC-TACEST: gi|352773103|gb|FQ470718.1|FQ470718
genomic: ATCAAGAGGAATGATGCTACTAGTCAGCCTGCTACTGCAACTACTGGCGGgttagttgat ... aatatttcagATACAAGCTTGTTGTCTCAGCACCAGAACCTAAGAAAATTGTATCTCCTAC
EST: ATCAAGAGGAATGATGCTACCAGTCAGCCTGCTACTGCAACTACTGGCGG ATACAAGCTTGTTGTCTCAAC-CCAGAACCTAAGA
genomic: ATCAAGAGGAATGATGCTACTAGTCAGCCTGCTACTGCAACTACTGGCGGgttagttgat ... aatatttcagATACAAGCTTGTTGTCTCAGCACCAGAACCTAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGTGTATTTTGCTTTTGAGGATGACAATATTGATGATGTGTTGACCGACATCAAGAGGAATGATGCTACTAGTCAGCCTGCTACTGCAACTACTGGCGGgttagttgataattttacaataaaaagaagatttccaaactctatataaaattatatccactagaaggtaaactacaaagtagtatgattatgattattg
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggtaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaagta