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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACACTCAGCCCCGGTTCCAGTTCATTGTGATGAATCGGCGCAACACAGgttggcacttcatttattgatcaataattcgttcttttatttttatttttatttttaattttttggctgtgataataattcatttctgcagtttcattat...

Basic information

species Vitis vinifera
transcript Vv06s0080g00860.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0080g00860.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G348866_T02 (Zea mays), 5'ss of exon 3
GAACACTCAGCCCCGGTTCCAGTTCATTGTGATGAATCGGCGCAACACAGgttggca---cttcatttattgatcaataattcgttcttttatttttatttttatttttaattttttggctg-tgataataattcatttctgcagtttcattat
|||| |||||||||| ||||||||||| || ||||| ||||||||||| |||  | |   |||| |   |||     |   |||||  ||| |||||||  | |       | |  || ||  ||   |  |    |  |  | ||  ||    
GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTGgtacggacgacttcctggcttgcgtcttgggtcgttggtttgtttttatgatgacccacc-tgtggtgcctactgcctaggagctgtaccaacggtagcaa---

upper sequence: Vv06s0080g00860.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S54_95V6.1 (Physcomitrella patens), 5'ss of exon 3
GAACACTCAGCCCCGGTTCCAGTTCATTGTGATGAATCGGCGCAACACAGgttggcacttcatttattgatcaataattcgttcttttatttttatttttatttttaattttttggctgtgataataattcatttctgcagtttcattat-----
|   || ||||| |||||||||||||| ||||||||||| ||||  ||||||  |    |     ||||  | | |      |||||||| ||        | ||||| |  || | |       | |||  |    | | |||   |       
GCGGACACAGCCGCGGTTCCAGTTCATAGTGATGAATCGTCGCAGTACAGgtgagtgact-----attggactacaggaacatcttttatattcggaagcgtctttaagtggttagatactcatttcatttttcatagaattttagctgcccttg

upper sequence: Vv06s0080g00860.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S197_88V6.1 (Physcomitrella patens), 5'ss of exon 4
GAACACTCAGCCCCGGTTCCAGTTCATTGTGATGAATCGGCGCAACACAGgttggcacttcatttattgatcaataattcgttcttttatttttatttttatttttaattttttggctgtgataataattcatt----tctgcagtttcattat
|  | | ||||| |||||||||||||| |||||||||||||  |  || ||| ||   ||      |||  |||||    | ||| |       | | | | |   ||    | |    | ||   |  |   |    | ||  | |||   ||
GCGCTCACAGCCACGGTTCCAGTTCATAGTGATGAATCGGCAGAGTACGGgtgggtggttacacggttg--caatagcatggtctgtatccgagagtgtgaata--aacgactagagcctcatttcatcttgctagaatgtgagggttccccat