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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACTATTTGAAGGATATTACTTCTGTCAAGCACAGAGGGAGGATTTCTTTCAGCGAGCTAAGCCTTACAAGGGTCATCCTACAATTCTGAGgtaaatgtttcaacccaaacctggcttctagatttgctcagctagttggaatgtcatcctcctgtactaattatcttcgtatttttatagcacaggaacaaaaggacatcttgaattcctactacatttacaatttaatcaagttgaacttatgttgtacatctgcatgctatgcag

Basic information

species Vitis vinifera
transcript Vv06s0080g00560.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0080g00560.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G39210.1 (Glycine max), 5'ss of exon 3
GAACTATTTGAAGGATATTACTTCTGTCAAGCACAGAGGGAGGATTTCTTTCAGCGAGCTAAGCCTTACAAGGGTCATCCTACAATTCTGAGgtaaatgtttcaacccaaacctggcttcta-gatttgctcagctagttggaatgt-catcctcctgtactaattatcttcgtatttttatagcaca-ggaacaaaaggacatcttgaattcctactacatttacaatttaatcaagttgaacttatgttgtacatctgcatgctatgcag
||||| |||||||| |||||||||||||| |||||||| ||||| ||| ||||  ||||||||||  | ||||  ||||| ||||| || |||||||    |  |   |||  | ||||||   || ||||    ||||       | ||| |  ||  |   | |     | |||| |  |     | || |||   | ||    | | |   |  |  || | ||   | ||  ||                                  
GAACTCTTTGAAGGTTATTACTTCTGTCAGGCACAGAGAGAGGAGTTCATTCAAAGAGCTAAGCCACATAAGGACCATCCCACAATCCTCAGgtaaaataattga---aaaagtagcttctgtaatctgcttc-ttagtcactgcttgcatgccactcaatggactggaaccatattatgctgctgtaagggacagtggaaccatattattcttttttgaatgttca---tgatgcag----------------------------------

upper sequence: Vv06s0080g00560.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G07960.1 (Glycine max), 5'ss of exon 3
GAACTATTTGAAGGATATTACTTCTGTCAAGCACAGAGGGAGGATTTCTTTCAGCGAGCTAAGCCTTACAAGGGTCATCCTACAATTCTGAGgtaaatgtttcaacccaaacctggcttctagatt----tgctcagctagttggaatgtcatcctcc-tgtact--aattatcttcgtatttttatagcacaggaacaaaaggacatcttgaattcctactacatttacaatttaatcaagttgaacttatg-ttgtacatctgcatgctatgcag
||||| |||||||| |||||||||||||| ||||| || ||||||||| ||||  ||||||||||  | ||||  ||||| ||||| || |||||||      ||   |||  |||||||| |  |    | |||||  | ||      |  |  ||  || |||  ||  || |  |  ||  | |   |  || | | ||  | || |||  ||  |  |  ||   ||   |  |  |||  | |||||  ||||     ||      ||| ||
GAACTCTTTGAAGGTTATTACTTCTGTCAGGCACAAAGAGAGGATTTCATTCAAAGAGCTAAGCCACATAAGGACCATCCCACAATCCTCAGgtaaaa----taattgaaaagtggcttctgggatctacttctcagtcacttcttgcatgcttttcaatggactacaaccatataag-gttgctgtttaaggggcagagaaacaaatattggctttgtcttttatgctcatcatcctgtagtgaatcttattcttgtttcaatgttcataatgtag

upper sequence: Vv06s0080g00560.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA12G31100.1 (Glycine max), 5'ss of exon 3
GAACTATTTGAAGGATATTACTTCTGTCAAGCACAGAGGGAGGATTTCTTTCAGCGAGCTAAGCCTTACAAGGGTCATCCTACAATTCTGAGgtaaatgtttcaacccaaacctggcttcta-gatttgctcagctagttggaatgt-catcctcctgtactaattatcttcgtatttttatagcaca-ggaacaaaaggac--atcttgaattcctactacatttacaatttaatcaagttgaacttatg-ttgtacatctgcatgctatgcag
|| || |||||||| |||||||||||||| ||||| || | ||||||||||||  ||||||||||  | ||||  ||||| ||||| || |||||||    |  |   |||  | ||||||   || ||||    ||||       | ||| |  ||  |  || |     |||||| |  |     | ||  || | | ||  || |||  ||  |  |  || | ||   |  |  | |  | |||||  ||||     ||      ||||||
GAGCTCTTTGAAGGTTATTACTTCTGTCAGGCACAAAGAGTGGATTTCTTTCAAAGAGCTAAGCCACATAAGGACCATCCCACAATCCTCAGgtaaaataattga---aaaagtagcttctgtaatctgcttc-ttagtcactgcttgcatgccactcaatgaactggaaccgtattatggtgttttaaggggcagaggaacaaatattggcttagtcttttatgtgcatcatcctgtaatgaatcttattcttgtttcaatgttcatgatgcag

upper sequence: Vv06s0080g00560.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA12G31100.2 (Glycine max), 5'ss of exon 4
GAACTATTTGAAGGATATTACTTCTGTCAAGCACAGAGGGAGGATTTCTTTCAGCGAGCTAAGCCTTACAAGGGTCATCCTACAATTCTGAGgtaaatgtttcaacccaaacctggcttcta-gatttgctcagctagttggaatgt-catcctcctgtactaattatcttcgtatttttatagcaca-ggaacaaaaggaca--tcttgaattcctactacatttacaatttaatcaagttgaacttatg-ttgtacatctgcatgctatgcag
   || |||||||| |||||||||||||| ||||| || | ||||||||||||  ||||||||||  | ||||  ||||| ||||| || |||||||    |  |   |||  | ||||||   || ||||    ||||       | ||| |  ||  |  || |     |||||| |  |     | ||  || | | |||  | |||  ||  |  |  || | ||   |  |  | |  | |||||  ||||     ||      ||||||
---CTCTTTGAAGGTTATTACTTCTGTCAGGCACAAAGAGTGGATTTCTTTCAAAGAGCTAAGCCACATAAGGACCATCCCACAATCCTCAGgtaaaataattga---aaaagtagcttctgtaatctgcttc-ttagtcactgcttgcatgccactcaatgaactggaaccgtattatggtgttttaaggggcagaggaacaaatattggcttagtcttttatgtgcatcatcctgtaatgaatcttattcttgtttcaatgttcatgatgcag

upper sequence: Vv06s0080g00560.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT2G27450.2 (Arabidopsis thaliana), 5'ss of exon 3
GAACTATTTGAAGGATATTACTTCTGTCAAGCACAGAGGGAGGATTTCTTTCAGCGAGCTAAGCCTTACAAGGGTCATCCTACAATTCTGAGgtaaatgtttcaacccaaacctggcttctagatttgctcagctagttggaatgtcatcctcctgtactaattatcttcgtatttttatagcacaggaacaaaaggacatcttgaattcctactacatttacaatttaatcaagttgaacttatgttgtacatctgcatgctatgcag
||||| ||||||||||||||||||||||||||||| || || || |||||| ||||||| ||||||||||||   |||||||| |||   ||||    ||  ||   |  | | |  |||||      | |||  |  |||||| ||             |  |||||  ||| | |  |||      ||     |||    || | ||   ||                                                       
GAACTTTTTGAAGGATATTACTTCTGTCAAGCACAAAGAGAAGACTTCTTTAAGCGAGCCAAGCCTTACAAGAACCATCCTACCATTGCAAGgt----gtgacattgcttatccgatttctaa-----cgcagtaaagtggaatctcg------------atgtatctatgtactatc-tagtgttttaatggttggatggtttaatttaacacag-----------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294965150|gb|GW836981.1|GW836981
EST:     GATTTCTTTCAGCGAGCTAAGCCTTACAAGGGTCATCCTACAATTCTGAG                         GATGCAAAAACTTGCAAAAGAGTTGGGAGTAGTGATACCAGTTAGCTTCTT
genomic: GATTTCTTTCAGCGAGCTAAGCCTTACAAGGGTCATCCTACAATTCTGAGgtaaatgttt ... tgctatgcagGATGCAAAAACTTGCAAAAGAGTTGGGAGTAGTGATACCAGTTAGCTTCTT
EST: gi|71863030|gb|DT012085.1|DT012085
EST:     GATTTCTTTCAGCGAGCTAAGCCTTACAAGGGTCATCCTACAATTCTGAG                         GATGCAAAAACTTGCAAAAGAGTTGGGAGTAGTGATACCAGTTAGCTTCTT
genomic: GATTTCTTTCAGCGAGCTAAGCCTTACAAGGGTCATCCTACAATTCTGAGgtaaatgttt ... tgctatgcagGATGCAAAAACTTGCAAAAGAGTTGGGAGTAGTGATACCAGTTAGCTTCTT
EST: gi|71859592|gb|DT008647.1|DT008647
EST:     GATTTCTTTCAGCGAGCTAAGCCTTACAAGGGTCATCCTACAATTCTGAG                         GATGCAAAAACTTGCAAAAGAGTTGGGAGTAGTGATACCAGTTAGCTTCTT
genomic: GATTTCTTTCAGCGAGCTAAGCCTTACAAGGGTCATCCTACAATTCTGAGgtaaatgttt ... tgctatgcagGATGCAAAAACTTGCAAAAGAGTTGGGAGTAGTGATACCAGTTAGCTTCTT
EST: gi|71864994|gb|DT014049.1|DT014049
EST:     GATTTCTTTCAGCGAGCTAAGCCTTACAAGGGTCATCCTACAATTCTGAG                         GATGCAAAAACTTGCAAAAGAGTTGGGAGTAGTGATACCAGTTAGCTTCTT
genomic: GATTTCTTTCAGCGAGCTAAGCCTTACAAGGGTCATCCTACAATTCTGAGgtaaatgttt ... tgctatgcagGATGCAAAAACTTGCAAAAGAGTTGGGAGTAGTGATACCAGTTAGCTTCTT
EST: gi|294963940|gb|GW836815.1|GW836815
EST:     GATTTCTTTCAGCGAGCAAAGCCTTACAAGGGTCATCCTACAATTCTGAG                         GATGCAAAAACTTGCAAAAGAGTTGGGAGTAGTGATACCAGTTAGCTTCTT
genomic: GATTTCTTTCAGCGAGCTAAGCCTTACAAGGGTCATCCTACAATTCTGAGgtaaatgttt ... tgctatgcagGATGCAAAAACTTGCAAAAGAGTTGGGAGTAGTGATACCAGTTAGCTTCTT
EST: gi|26257496|gb|CA808559.1|CA808559
EST:     GATTTCTTTCAGCGAGCTAAGCCTTACAAGGGTCATCCTACAATTCTGAG                         GATGCAAAAACTTGCAAAAGAGTTGGGAGTAGTGATACCAGTTAGCTTCTT
genomic: GATTTCTTTCAGCGAGCTAAGCCTTACAAGGGTCATCCTACAATTCTGAGgtaaatgttt ... tgctatgcagGATGCAAAAACTTGCAAAAGAGTTGGGAGTAGTGATACCAGTTAGCTTCTT
EST: gi|71863516|gb|DT012571.1|DT012571
EST:     GATTTCTTTCAGCGAGCTAAGCCTTACAAGGGTCATCCTACAATTCTGAG                         GATGCAAAAACTTGCAAAAGAGTTGGGAGTAGTGATACCAGTTAGCTTCTT
genomic: GATTTCTTTCAGCGAGCTAAGCCTTACAAGGGTCATCCTACAATTCTGAGgtaaatgttt ... tgctatgcagGATGCAAAAACTTGCAAAAGAGTTGGGAGTAGTGATACCAGTTAGCTTCTT
EST: gi|110385570|gb|EC950109.1|EC950109
EST:     A-TTCTTTCAGCGAGCTAAGCC-TACAAGGGGTCATCCTACAATTCTGAG                         GATGCAAAAACTTGCAAAAGAGTTGGGAGTAGTGATACCAGTTAGCTTCTT
genomic: ATTTCTTTCAGCGAGCTAAGCCTTACAA-GGGTCATCCTACAATTCTGAGgtaaatgttt ... tgctatgcagGATGCAAAAACTTGCAAAAGAGTTGGGAGTAGTGATACCAGTTAGCTTCTT
EST: gi|352782096|gb|FQ469394.1|FQ469394
EST:     GATTTCTTTCAGCGAGCTAAGCCTTACAAGGGTCATCCTACAATTCTGAG                         GATGCAAAAACTTGCAAAAGAGTTGGGAGTAGTGATACCAGTTAGCTTCTT
genomic: GATTTCTTTCAGCGAGCTAAGCCTTACAAGGGTCATCCTACAATTCTGAGgtaaatgttt ... tgctatgcagGATGCAAAAACTTGCAAAAGAGTTGGGAGTAGTGATACCAGTTAGCTTCTT
EST: gi|71865063|gb|DT014118.1|DT014118
EST:     GATTTCTTTCAGCGAGCTAAGCCTTACAAGGGTCATCCTACAATTCTGAG                         GATGCAAAAACTTGCAAAAGAGTTGGGAGTAGTGATACCAGTTAGCTTCTT
genomic: GATTTCTTTCAGCGAGCTAAGCCTTACAAGGGTCATCCTACAATTCTGAGgtaaatgttt ... tgctatgcagGATGCAAAAACTTGCAAAAGAGTTGGGAGTAGTGATACCAGTTAGCTTCTT
EST: gi|71858886|gb|DT007941.1|DT007941
EST:     GATTTCTTTCAGCGAGCTAAGCCTTACAAGGGTCATCCTACAATTCTGAG                         GATGCAAAAACTTGCAAAAGAGTTGGGAGTAGTGATACCAGTTAGCTTCTT
genomic: GATTTCTTTCAGCGAGCTAAGCCTTACAAGGGTCATCCTACAATTCTGAGgtaaatgttt ... tgctatgcagGATGCAAAAACTTGCAAAAGAGTTGGGAGTAGTGATACCAGTTAGCTTCTT
EST: gi|18459688|gb|BM437966.1|BM437966
EST:     GATTTCTTTCAGCGAGCTAAGCCTTACAAGGGTCATCCTACAATTCTGAG                         GATGCAAAAACTTGCAAAAGAGTTGGGAGTAGTGATACCAGTTAGCTTCTT
genomic: GATTTCTTTCAGCGAGCTAAGCCTTACAAGGGTCATCCTACAATTCTGAGgtaaatgttt ... tgctatgcagGATGCAAAAACTTGCAAAAGAGTTGGGAGTAGTGATACCAGTTAGCTTCTT