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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGGTATGCAGTCCCGCCTTCTGTTCTCCAGGTTCTGATTTCCAAGTATGATGATCGAAGTGGCCGGAGGGTTGAACTCAATTTTGACAGTTTTGTTGAgtaagtcttgtcttattgaacacattggatgcaaattttttagatttagaaagtgtcttaacagttctaatgttttgttttgttggatgtgcag

Basic information

species Vitis vinifera
transcript Vv06s0080g00450.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0080g00450.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G39240.1 (Glycine max), 5'ss of exon 3
TTGGGTATGCAGTCCCGCCTTCTGTTCTCCAGGTTCTGATTTCCAAGTATGATGATCGAAGTGGCCGGAGGGTTGAACTCAATTTTGACAGTTTTGTTGAgtaagtcttgtcttattgaacacattggatgca--aattttttagatttagaaagtgtcttaacagttctaa--tgttttgttttg---ttggatgtgcag---
|||| ||||| || ||    || ||||| ||  | ||| |||| ||||||| |||| |||||||  |||||||||||||   ||||||||||||||| |||||||| |    ||||      | ||| |   |  || |||||   ||| |  | ||    || | || ||     ||||| ||||    | ||  ||      
TTGGCTATGCTGTACCAGGCTCGGTTCTACAACTACTGCTTTCAAAGTATGGTGATGGAAGTGGTAGGAGGGTTGAACTTGGTTTTGACAGTTTTGTCGAgtaagt-taactttatctgggtctttgaagagagtaacttttttattttggtcattga---aagatttttagatcattttgatttggtcctcgaaatgttatta

upper sequence: Vv06s0080g00450.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA12G31070.1 (Glycine max), 5'ss of exon 3
TTGGGTATGCAGTCCCGCCTTCTGTTCTCCAGGTTCTGATTTCCAAGTATGATGATCGAAGTGGCCGGAGGGTTGAACTCAATTTTGACAGTTTTGTTGAgtaagtcttgtcttattgaacacattggatgcaaattttttagatttagaaagtgtcttaacagttctaatgttttgttttgt--tggatgtgcag------
|||| ||||| || |||   || ||||| ||  ||||| ||||||| || | |||| |||||||  |||||||||||||   ||||||||||||||| |||||||  || | ||||      | ||| |   |     |||  |||| |  ||| |   |    || ||||  ||  ||| ||  | ||  ||         
TTGGCTATGCTGTACCGGGCTCGGTTCTACAACTTCTGCTTTCCAAATACGGTGATGGAAGTGGTAGGAGGGTTGAACTTGGTTTTGACAGTTTTGTCGAgtaagattt-ttttatctgggtctttgaagagagtaaattttcattttggtagt-tgagagattttttaatcattaatttggtcctcgaaatgttattacat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110371917|gb|EC936052.1|EC936052
EST:     GATGATCGAAGTGGACGGAGGGTTGAACTCAATTTTGACAGTTTTGTTGA                         GTGTGGGATGATTGTGAAG
genomic: GATGATCGAAGTGGCCGGAGGGTTGAACTCAATTTTGACAGTTTTGTTGAgtaagtcttg ... ggatgtgcagGTGTGGGATGATTGTGAAG
EST: gi|122691258|gb|EC970784.1|EC970784
EST:     GATGATCGAAGTGGCCGGAGGGTTGAACTCAATTTTGACAGTTTTGTTGA                         GTGTGGGATGATTGTGAAG
genomic: GATGATCGAAGTGGCCGGAGGGTTGAACTCAATTTTGACAGTTTTGTTGAgtaagtcttg ... ggatgtgcagGTGTGGGATGATTGTGAAG
EST: gi|122691312|gb|EC972650.1|EC972650
EST:     GATGATCGAAGTGGCCGGAGGGTTGAACTCAATTTTGACAGTTTTGTTGA                         GTGTGGGATGATTGTGAAG
genomic: GATGATCGAAGTGGCCGGAGGGTTGAACTCAATTTTGACAGTTTTGTTGAgtaagtcttg ... ggatgtgcagGTGTGGGATGATTGTGAAG
EST: gi|110386117|gb|EC950691.1|EC950691
EST:     GATGATCGAAGTGGACGGAGGGTTGAACTCAATTTTGACAGTTTTGTTGA                         GTGTGGGATGATTGTGAAG
genomic: GATGATCGAAGTGGCCGGAGGGTTGAACTCAATTTTGACAGTTTTGTTGAgtaagtcttg ... ggatgtgcagGTGTGGGATGATTGTGAAG