Sequence
atgc intronic sequence ATGC exonic sequenceCAATCAAGAAGGATCTGCCTTTGATTTTGGGGAGCTGGAAGAAGCAATTGTGCTGCAAGGTGTTAAGATTAGAAATGATGAAGCTAAAACTTgtatgcttctctctccctctccatgtatctcatttctccctttgatgacgtttgataggtataaccaactctcagagagagagagagagagagagagaga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0080g00360.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA12G09430.3 (Glycine max), 5'ss of exon 3
CAATCAAGAAGGATCTGCCTTTGATTTTGGGGAGCTGGAAGAAGCAATTGTGCTGCAAGGTGTTAAGATTAGAAATGATGAAGCTAAAACTTgtatgcttc--tctctccctctccatgtatctcatttctccctttgatgacgtttgataggtataac---caactctcagagagagagagagagagagagagaga--
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CAATCAAG---GGTCTGCTTTTGATTTTGGGGAGTTGGAAGAGGCAATTGTTCTGCAAGGAATTAAGATAAGAAATGATGAAGCCAAAGCATgtatgtttcattgtttccctttccatgg-------ttctccttttgatgacgttagaaaagcataataggcaactctttctccaaaagcatagagaagaaagaagtg
upper sequence: Vv06s0080g00360.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA12G30990.1 (Glycine max), 5'ss of exon 3
CAATCAAGAAGGATCTGCCTTTGATTTTGGGGAGCTGGAAGAAGCAATTGTGCTGCAAGGTGTTAAGATTAGAAATGATGAAGCTAAAACTTgtatgcttctctctccctctccatgtatctcatttctccctttgatgacgtttgataggtataaccaactct---cagagagagagagagagagagagagaga-
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CAATCAAG---GATCTGCTTTTGATTTTGGGGAGCTGGAGGAAGCAATTGTTCTGCATGGAGTTAAGGGTAGAAATGATGAGGGCAAAGCATgtatgtttccgtttccatcact-tatgcttcttttttttttctga---cgttaggtaatcataaccaactctttccaaaagcagagagaaaaaggggtgaagga
upper sequence: Vv06s0080g00360.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G08320.1 (Arabidopsis thaliana), 5'ss of exon 3
CAATCAAGAAGGATCTGCC---TTTGATTTTGGGGAGCTGGAAGAAGCAATTGTGCTGCAAGGTGTTAAGATTAGAAATGATGAAGCTAAAACTTgtatgcttctctctccctctcca---tgtatctcattt-ctccctttgatgacgtttgatag-gtataaccaactctcagagagagagagagagagagagagaga
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TAACCAAGATGGATCGTCCAGTTTCGATTTTGGAGAGCTAGAAGAAGCAATTGTTCTGCAAGGTGTCAAGTATAGGAACGAGGAAGCCAAGCCACgtaagcccccctctctctctcaaatcttcatgacgtgagctttccttaacaaactccaataaagtttttaaaattctgagcaaaaaactgaaactggaaa-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161715403|gb|FC065830.1|FC065830EST: AGCAATTGTGCTGCAAGGTGTTAAGATTAGAAATGATGAAGCTAAAACTT CTTTATTCACAGCCAGGCCTGCAGCTACTCTGGAAATGTTCCCTTCATGGC
genomic: AGCAATTGTGCTGCAAGGTGTTAAGATTAGAAATGATGAAGCTAAAACTTgtatgcttct ... attcttgcagCTTTATTCACAGCCAGGCCTGCAGCTACTCTGGAAATGTTCCCTTCATGGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAATCAAGAAGGATCTGCCTTTGATTTTGGGGAGCTGGAAGAAGCAATTGTGCTGCAAGGTGTTAAGATTAGAAATGATGAAGCTAAAACTTgtatgcttctctctccctctccatgtatctcatttctccctttgatgacgtttgataggtataaccaactctcagagagagagagagagagagagagaga
- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agagaga