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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGCAGTTGCTGCACCTGGTGGTGGTGGTGCCGCCGCACCTGCTGCTGCGGAGCCTAAGAAAGAGGAGAAAGTGGAAGAAAAAGAAGAGTCTGATGATgtaagattattattattatttttaaatagcaatatttttttttggtaaaataacaataatttaccatcttgattggcctttttgtttggttaaataacatgttgctttctattttgtttgtttttttttttttgcag

Basic information

species Vitis vinifera
transcript Vv06s0061g01600.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30325060|gb|CD008322.1|CD008322
EST:     CGGAGCCTAAGAAAGAGGAGAAAGTGGAAGAAAAAGAAGAGTCTGATGAT                         GATATGGGTTTCAGTCTCTTTGACTGAGAGATCAGGACGCTGGTCTGTTTG
genomic: CGGAGCCTAAGAAAGAGGAGAAAGTGGAAGAAAAAGAAGAGTCTGATGATgtaagattat ... ttttttgcagGATATGGGTTTCAGTCTCTTTGACTGAGAGATCAAGATGCTGGTCTGTTTG
EST: gi|37188500|gb|CF607849.1|CF607849
EST:     CGGAGCCTAAGAAAGAGGAGAAAGTGGAAGAAAAAGAAGAGTCTGATGAT                         GATATGGGTTTCAGTCTCTTTGACTGAGAGATCAGGACGCTGGTCTGTTTG
genomic: CGGAGCCTAAGAAAGAGGAGAAAGTGGAAGAAAAAGAAGAGTCTGATGATgtaagattat ... ttttttgcagGATATGGGTTTCAGTCTCTTTGACTGAGAGATCAAGATGCTGGTCTGTTTG
EST: gi|30326466|gb|CD009728.1|CD009728
EST:     CGGAGCCTAAGAAAGAGGAGAAAGTGGAAGAAAAAGAAGAGTCTGATGAT                         GATATGGGTTTCAGTCTCTTTGACTGAGAGATCAGGACGCTGGTCTGTTTG
genomic: CGGAGCCTAAGAAAGAGGAGAAAGTGGAAGAAAAAGAAGAGTCTGATGATgtaagattat ... ttttttgcagGATATGGGTTTCAGTCTCTTTGACTGAGAGATCAAGATGCTGGTCTGTTTG
EST: gi|110377418|gb|EC942480.1|EC942480
EST:     CGGAGCCTAAGAAAGAGGAGAAAGTGGAAGAAAAAGAAGAGTCTGATGAT                         GATATGGGTTTCAGTCTCTTTGACTGAGAGATCAAGATGCTGGTCTGTTTG
genomic: CGGAGCCTAAGAAAGAGGAGAAAGTGGAAGAAAAAGAAGAGTCTGATGATgtaagattat ... ttttttgcagGATATGGGTTTCAGTCTCTTTGACTGAGAGATCAAGATGCTGGTCTGTTTG
EST: gi|110695251|gb|EE073052.1|EE073052
EST:     CGGAGCCTAAGAAAGAGGAGAAAGTGGAAGAAAAAGAAGAGTCTGATGAT                         GATATGGGTTTCAGTCTCTTTGACTGAGAGATCAGGACGCTGGTCTGTTTG
genomic: CGGAGCCTAAGAAAGAGGAGAAAGTGGAAGAAAAAGAAGAGTCTGATGATgtaagattat ... ttttttgcagGATATGGGTTTCAGTCTCTTTGACTGAGAGATCAAGATGCTGGTCTGTTTG
EST: gi|352787105|gb|FQ476332.1|FQ476332
EST:     CGGAGCCTAAGAAAGAGGAGAAAGTGGAAGAAAAAGAAGAGTCTGATGAT                         GATATGGGTTTCAGTCTCTTTGACTGAGAGATCAGGACGCTGGTCTGTTTG
genomic: CGGAGCCTAAGAAAGAGGAGAAAGTGGAAGAAAAAGAAGAGTCTGATGATgtaagattat ... ttttttgcagGATATGGGTTTCAGTCTCTTTGACTGAGAGATCAAGATGCTGGTCTGTTTG
EST: gi|37188204|gb|CF607553.1|CF607553
EST:     CGGAGCCTAAGAAAGAGGAGAAAGTGGAAGAAAAAGAAGAGTCTGATGAT                         GATATGGGTTTCAGTCTCTTTGACTGAGAGATCAGGACGCTGGTCTGTTTG
genomic: CGGAGCCTAAGAAAGAGGAGAAAGTGGAAGAAAAAGAAGAGTCTGATGATgtaagattat ... ttttttgcagGATATGGGTTTCAGTCTCTTTGACTGAGAGATCAAGATGCTGGTCTGTTTG
EST: gi|110689604|gb|EE065975.1|EE065975
EST:     CGGAGCCTAAGAAAGAGGAGAAAGTGGAAGAAAAAGAAGAGTCTGATGAT                         GATATGGGTTTCAGTCTCTTTGACTGAGAGATCAGGACGCTGGTCTGTTTG
genomic: CGGAGCCTAAGAAAGAGGAGAAAGTGGAAGAAAAAGAAGAGTCTGATGATgtaagattat ... ttttttgcagGATATGGGTTTCAGTCTCTTTGACTGAGAGATCAAGATGCTGGTCTGTTTG
EST: gi|37188905|gb|CF608254.1|CF608254
EST:     CGGAGCCTAAGAAAGAGGAGAAAGTGGAAGAAAAAGAAGAGTCTGATGAT                         GATATGGGTTTCAGTCTCTTTGACTGAGAGATCAGGACGCTGGTCTGTTTG
genomic: CGGAGCCTAAGAAAGAGGAGAAAGTGGAAGAAAAAGAAGAGTCTGATGATgtaagattat ... ttttttgcagGATATGGGTTTCAGTCTCTTTGACTGAGAGATCAAGATGCTGGTCTGTTTG
EST: gi|22012639|gb|BQ797673.1|BQ797673
EST:     CGGAGCCTAAGAAAGAGGAGAAAGTGGAAGAAAAAGAAGAGTCTGATGAT                         GATATGGGTTTCAGTCTCTTTGACTGAGAGATCAGGACGCTGGTCTGTTTG
genomic: CGGAGCCTAAGAAAGAGGAGAAAGTGGAAGAAAAAGAAGAGTCTGATGATgtaagattat ... ttttttgcagGATATGGGTTTCAGTCTCTTTGACTGAGAGATCAAGATGCTGGTCTGTTTG
EST: gi|110361395|gb|EC924863.1|EC924863
EST:     CGGAGCCTAAGAAAGAGGAGAAAGTGGAAGAAAAAGAAGAGTCTGATGAT                         GATATGGGTTTCAGTCTCTTTGACTGAGAGATCAAGATGCTGGTCTGTTTG
genomic: CGGAGCCTAAGAAAGAGGAGAAAGTGGAAGAAAAAGAAGAGTCTGATGATgtaagattat ... ttttttgcagGATATGGGTTTCAGTCTCTTTGACTGAGAGATCAAGATGCTGGTCTGTTTG
EST: gi|32272311|gb|CD721470.1|CD721470
EST:     CGGAGCCTAAGAAAGAGGAGAAAGTGGAAGAAAAAGAAGAGTCTGATGAT                         GATATGGGTTTCAGTCTCTTTGACTGAGAGATCAGGACGCTGGTCTGTTTG
genomic: CGGAGCCTAAGAAAGAGGAGAAAGTGGAAGAAAAAGAAGAGTCTGATGATgtaagattat ... ttttttgcagGATATGGGTTTCAGTCTCTTTGACTGAGAGATCAAGATGCTGGTCTGTTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTTGCAGTTGCTGCACCTGGTGGTGGTGGTGCCGCCGCACCTGCTGCTGCGGAGCCTAAGAAAGAGGAGAAAGTGGAAGAAAAAGAAGAGTCTGATGATgtaagattattattattatttttaaatagcaatatttttttttggtaaaataacaataatttaccatcttgattggcctttttgtttggttaaataacatgttgctttctattttgtttgtttttttttttttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG