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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAGATGCTGCTGGACTAAGATCCTCACTCATGAAAGCAAGTCTGTTCTTGTGGTTGCTCACAATGCCGTTAATCAGGCTCTCGTTGCAACGGCAATTGgtactgtttcccatcttattgttaacttggtgctttattatgtaaattgccattttcaatgtagtttttttcttcccttttctttctggcgattag

Basic information

species Vitis vinifera
transcript Vv06s0061g01340.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g01340.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G19400.1 (Glycine max), 5'ss of exon 3
GCTAGATGCTGCTGGACTAAGATCCTCACTCATGAAAGCAAGTCTGTTCTTGTGGTTGCTCACAATGCCGTTAATCAGGCTCTCGTTGCAACGGCAATTGgtac-tgtttcccatcttat----tgttaact-tggtgctttattatgtaaatt--gccattttcaatgtagtttttttcttcccttttctttctggcgattag
|||||| ||||||||||||| ||| |  ||||||| |||| ||||||||||||||||||||||||||| ||||||||||| || ||||| || ||||||||||| |||||| |    ||     | || ||  ||       |  ||  |||||  | || ||| |||   ||  |   |||  |||  ||| ||  | || ||
GCTAGAAGCTGCTGGACTAAAATCTTAGCTCATGATAGCAGGTCTGTTCTTGTGGTTGCTCACAATGCTGTTAATCAGGCCCTTGTTGCCACAGCAATTGgtacctgtttctccctctaggaaatattgacgatgaaaagaaaagattgaaattttgtcaatttgaataacgtgctcgccttttcttcccttcctcacaatcag

upper sequence: Vv06s0061g01340.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA12G09100.1 (Glycine max), 5'ss of exon 3
GCTAGATGCTGCTGGACTAAGATCCTCACTCATGAAAGCAAGTCTGTTCTTGTGGTTGCTCACAATGCCGTTAATCAGGCTCTCGTTGCAACGGCAATTGgtac-tgtttcccatctta-----ttgttaacttggtgctttattatgtaaatt--gccattttcaatgtagtttttttcttcccttttctttctggcgattag
|||||| ||||||||||||  ||| |  ||||||| |||| ||||||||||||||||||||||||||| ||||||||||| || ||||  || ||||||||||| |||||| |    ||     || |||   ||       |  ||  |||||  | || ||| |||   ||      |||  |||   || ||  | || ||
GCTAGAAGCTGCTGGACTAGAATCTTAGCTCATGATAGCAGGTCTGTTCTTGTGGTTGCTCACAATGCTGTTAATCAGGCCCTTGTTGGCACAGCAATTGgtacctgtttctccctctaggaaatttttatgatgaaaagaaaagattgaaattttgtcaatttgaataatgtgcccaccttttcttccattcctcacaatcag

upper sequence: Vv06s0061g01340.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G22620.1 (Arabidopsis thaliana), 5'ss of exon 3
GCTAGATGCTGCTGGACTAAGATCCTCACTCATGAAAGCAAGTCTGTTCTTGTGGTTGCTCACAATGCCGTTAATCAGGCTCTCGTTGCAACGGCAATTGgtactgtttcccatcttattgttaacttggtgctttattatgtaaattgccattt-tcaatgtagtttttttcttcccttttctttctggcgattag-----
|||||| |||| ||| ||   || ||  ||||||| |||||||||||||| || |||||||| ||||| ||||||||||||||  | ||||| ||||||||||   | | |  | || || ||   || | |    | ||    | ||  ||||| ||  |  |||||||||     || |  ||| |||    ||      
GCTAGAAGCTGTTGGCCTGGTATTCTTGCTCATGAGAGCAAGTCTGTTCTCGTTGTTGCTCATAATGCTGTTAATCAGGCTCTTCTGGCAACAGCAATTGgtaacttgttcttttttcttctt---ttagcg----actagccgatttttcatttctctgttaagttttttttaagtctgtggtttttggttgatatgttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351025769|gb|FQ426783.1|FQ426783
EST:     TGTGGTTGCTCACAATGCCGTTAATCAGGCTCTCGTTGCAACGGCAATTG                         GTCTAGGAACAGAGTATTTCAGGATTTTACTCCAGAGCAACTGCGGTGCAA
genomic: TGTGGTTGCTCACAATGCCGTTAATCAGGCTCTCGTTGCAACGGCAATTGgtactgtttc ... tggcgattagGTCTAGGAACAGAGTATTTCAGGATTTTACTCCAGAGCAACTGCGGTGCAA
EST: gi|352786696|gb|FQ479903.1|FQ479903
EST:     TGTGGTTGCTCACAATGCCGTTAATCAGGCTCTCGTTGCAACGGCAATTG                         GTCTAGGAACAGAGTATTTCAGGATTTTACTCCAGAGCAACTGCGGTGCAA
genomic: TGTGGTTGCTCACAATGCCGTTAATCAGGCTCTCGTTGCAACGGCAATTGgtactgtttc ... tggcgattagGTCTAGGAACAGAGTATTTCAGGATTTTACTCCAGAGCAACTGCGGTGCAA