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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCTGATCAGGAGGCTGTTATGGTTGGAAGGGTTGATAGATTTTATTTTCCCGATGATGATAATGTGTACAATATGGAACTCAGGGAACTCCTAAGCAGgtatgaaaccttattattaaaggtcttatatatttggtcttttgaaatgttccagtattcaatgggaatttttttcatgttgcag

Basic information

species Vitis vinifera
transcript Vv06s0061g00860.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g00860.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os09g39690.1 (Oryza sativa), 5'ss of exon 3
CTTCTGATCAGGAGGCTGTTATGGTTGGAAGGGTTGATAGATTTTATTTTCCCGATGATGATAATGTGTACAATATGGAACTCAGGGAACTCCTAAGCAGgtatgaa-accttattattaaaggtcttatatatttggtcttttgaaatgttccagtattca-atgggaatttttttcatgttgcag
|   |||||| ||  ||| | |  || |||| | | |||  |||       | ||||||||||||||||||| ||  ||||| ||||||||||||||||||| |    |  |  ||  | |||    | | |      | |||    |  |  |||  |  | |  | | |  | |||||  |||||
CAATTGATCATGATTCTGCTCTTATTAGAAGAGCTAATACGTTTGTCCCAGCTGATGATGATAATGTGTACAGTACAGAACTAAGGGAACTCCTAAGCAGgtttttttatttctttcatgaagaaagtctctgcaacatatttctttagttctcagcgtaaatactgaattagtgttcattctgcag

upper sequence: Vv06s0061g00860.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA12G30330.1 (Glycine max), 5'ss of exon 6
CTTCTGATCAGGAGGCTGTTATGGTTGGAAGGGTTGATAGATTTTATTTTCCCGATGATGATAATGTGTACAATATGGAACTCAGGGAACTCCTAAGCAGgtatgaaaccttattattaaaggtcttatatatttggtcttttgaaatgttcca-gta---ttcaatgggaattt-ttttcatgttgcag
|||||||| | || |  | |   ||||| ||  || || ||||||||||||| || ||||| ||||| |||| | | |||||||||||| | ||||| |||||||      |   ||  |  || | |   | |   | || | |||||   || |||   |  |||    |||| ||||| | | ||||
CTTCTGATAATGAAGTAGCTCCAGTTGGTAGAATTCATGGATTTTATTTTCCTGAAGATGACAATGTATACAGTGTTGAACTCAGGGAATTGCTAAGTAGgtatgttgatatga-atggagagtttcaacaaatctcttttgtaaaatgaaacaagtaaattagaataaatatttcttttcctttggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110732740|gb|EE108301.1|EE108301
EST:     CCCGATGATGATAATGTGTACAATATGGAACTCAGGGAACTCCTAAGCAG                         GAGAAGTGTCTCTAATCTTCTTCGGAGTGGTTTCCGTGAAAACCTGGACCG
genomic: CCCGATGATGATAATGTGTACAATATGGAACTCAGGGAACTCCTAAGCAGgtatgaaacc ... catgttgcagGAGAAGTGTCTCTAATCTTCTTCGGAGTGGTTTCCGTGAAAACCTGGACCG
EST: gi|37185066|gb|CF604419.1|CF604419
EST:     CCCGATGATGATAATGTGTACAATATGGAACTCAGGGAACTCCTAAGCAG                         GAGAAGTGTCTCTAATCTTCTTCGGAGTGGTTTCCGTGAAAACCTGGACCG
genomic: CCCGATGATGATAATGTGTACAATATGGAACTCAGGGAACTCCTAAGCAGgtatgaaacc ... catgttgcagGAGAAGTGTCTCTAATCTTCTTCGGAGTGGTTTCCGTGAAAACCTGGACCG