Sequence
atgc intronic sequence ATGC exonic sequenceAAGGGAACTTGGCTTTACATTCTCTTTTCCTGTGAAGCAAACATCTGTTTCATCAGGCATTCTAATTAAATGGACAAAAAGATTTTCCGTCAAAGACATGgttagtgagacaatgttctagtaacttatactcttgattgctccacaacaattttaaactttaatggaagggactgatagagttgttttgaaaagttcct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA01G43650.1 (Glycine max), 5'ss of exon 3
AAGGGAACTTGGCTTTACATTCTCTTTTCCTGTGAAGCAAACATCTGTTTCATCAGGCATTCTAATTAAATGGACAAAAAGATTTTCCGTCAAAGACATGgttagtgagacaatgttctagtaacttatactcttgat--tgctccacaacaattttaaactttaatggaagggac-tgatagagttgttttgaaaagttcct
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AAGGGAGCTTGGATTTACATTCTCCTTTCCTGTGAAACAAATGTCTGTTTCTTCTGGCATTTTAATCAAATGGACAAAAGGGTTTTCCATCGGAAATATGgttagtcggacgactttcaagcagtttctacgtgaaagcatgtattgtgatagatatcaattctcatttaacattcatcataaaacttgatcactaattt---
upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G01820.1 (Glycine max), 5'ss of exon 3
AAGGGAACTTGGCTTTACATTCTCTTTTCCTGTGAAGCAAACATCTGTTTCATCAGGCATTCTAATTAAATGGACAAAAAGATTTTCCGTCAAAGACATGgttagtgagacaatgttctagtaact--tatactcttgattgctccacaacaattttaaactttaatggaagggac-tgatagagttgttttgaaaagttcct
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AAGGGAGCTTGGATTTACATTCTCCTTTCCTGTGAAACAAATGTCTGTATCTTCTGGCATTTTAATCAAATGGACAAAAGGGTTTTCCATCGTAGATATGgttagtcagttgactttcaagcagtttctaaatgaatgcttgtattgtgatagatagcaattctcgtataatatttatcctaaaacttgatcactaactt---
upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA12G02450.1 (Glycine max), 5'ss of exon 3
AAGGGAACTTGGCTTTACATTCTCTTTTCCTGTGAAGCAAACATCTGTTTCATCAGGCATTCTAATTAAATGGACAAAAAGATTTTCCGTCAAAGACATGgttagtgagacaatgttctagtaacttatactcttga---ttgc-tccacaacaattttaaactttaatgg---aagggactgatagagttgttttgaaaagttcct------------------------------------------
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AAGGGAACTTGGATTCACATTTTCTTTCCCTGTGAAACAAATGTCTGTTTCCTCTGGCATTTTATTAAAATGGACAAAAGGGTTTTCCATTGTAGATTTGgttagttcgttggctttcaatcaatttgaatatgaaaaacttatattcatagagatcttgaactgaaggagtttttgacaataccaaagctatatatttgaatttgaataatataacaaatattaagtgcaaaaactgtttgttgtcag
upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G10130.1 (Glycine max), 5'ss of exon 3
AAGGGAACTTGGCTTTACATTCTCTTTTCCTGTGAAGCAAACATCTGTTTCATCAGGCATTCTAATTAAATGGACAAAAAGATTTTCCGTCAAAGACATGgttagtgagacaatgttctagtaactt--atactcttgattgc--tccacaacaattttaaactttaatggaagg------gactgatagagttgt---tttgaa---aagttcct---------------------------------------
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AAGGGAACTTGGATTCACATTTTCTTTCCCTGTGAAACAAATGTCTGTTTCCTCTGGCATTTTATTAAAATGGACAAAAGGGTTTTCCATTGTAGATATGgttagtttgttggctttcaatctatttcaatatgaaaaacttctattcagagagatcttgtgaaataaaggagtttttgtcaaataccaaagctatatatttgaatttaaataatttaacaaatattaagtgcaaaaacaactgtttgttgtcag
upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G50460.1 (Arabidopsis thaliana), 5'ss of exon 3
AAGGGAACTTGGCTTTACATTCTCTTTTCCTGTGAAGCAAACATCTGTTTCATCAGGCATTCTAATTAAATGGACAAAAAGATTTTCCGTCAAAGACATGgttagtgagacaatgttctagtaacttatactcttgattgctccacaacaattttaaactttaatggaagggactgatagagttgttttgaaaagttcct------
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AAGGGAACTTGCATTTACGTTCTCATTCCCTGTCAAGCATACTTCTATTTCTTCAGGAGTTCTAATTAAATGGACCAAAGGTTTTGAGATTAGTGAAATGgttagtacagggatgcttacattgctt-----cttatattctctgcaa-actgtgacttgtctttgaaatatccttccaaatctattaacttgatatcctgacgcaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161721153|gb|FC070389.1|FC070389EST: CATCAGGCATTCTAATTAAATGGACAAAAGGATTTTCCGTCAAAGACATG GTTGGAAAAGATGTGTCTGAATGTTTACAACATGCAATGACAAGAAATGGA
genomic: CATCAGGCATTCTAATTAAATGGACAAAAAGATTTTCCGTCAAAGACATGgttagtgaga ... tggttgtcagGTTGGAAAAGATGTGTCTGAATGTTTACAACATGCAATGACAAGAAATGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGGGAACTTGGCTTTACATTCTCTTTTCCTGTGAAGCAAACATCTGTTTCATCAGGCATTCTAATTAAATGGACAAAAAGATTTTCCGTCAAAGACATGgttagtgagacaatgttctagtaacttatactcttgattgctccacaacaattttaaactttaatggaagggactgatagagttgttttgaaaagttcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagggac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgaaaa