Sequence
atgc intronic sequence ATGC exonic sequenceTGATTGTGGGAGAGGTTGCTAATTTTGTGGCATATGCATTCGCCCCAGCTGTTCTTGTTACCCCTCTTGGGGCATTAAGTATCATTGTCAGgtaatcagtagtgcattcaatttctttatgagttaacactcgaatggccttgttggttggtttatgatgttttgaatggtttgctgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0009g03650.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os05g43790.1 (Oryza sativa), 5'ss of exon 3
TGATTGTGGGAGAGGTTGCTAATTTTGTGGCATATGCATTCGCCCCAGCTGTTCTTGTTACCCCTCTTGGGGCATTAAGTATCATTGTCAGgtaatcagtagtgcattca---atttctttatgagttaacactcgaatggccttgttggttggtttatgatgttttgaatggtttgctgcag----------------------
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TGATTGTGGGAGAAGTTGCCAATTTCGTCGCATACGCCTTCGCTCCCGCGGTTCTTGTTACTCCTCTTGGAGCACTGAGCATAATTGTTAGgtga--agtactacatacatacagcaagctgtaatttgtttttgcaattgtgt-attggaaagt--gtgatactgagagtagtgtg-tgtatttggcggtgtcttcgctttcag
upper sequence: Vv06s0009g03650.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os05g43790.3 (Oryza sativa), 5'ss of exon 3
TGATTGTGGGAGAGGTTGCTAATTTTGTGGCATATGCATTCGCCCCAGCTGTTCTTGTTACCCCTCTTGGGGCATTAAGTATCATTGTCAGgtaatcagtagtgcattca---atttctttatgagttaacactcgaatggccttgttggttggtttatgatgttttgaatggtttgctgcag---------------------------
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TGATTGTGGGAGAAGTTGCCAATTTCGTCGCATACGCCTTCGCTCCCGCGGTTCTTGTTACTCCTCTTGGAGCACTGAGCATAATTGTTAGgtga--agtactacatacatacagcaagctgtaatttgtttttgcaattgtgt-attggaaagt--gtgatactgagagtagtgtg-tgtatttggcggtgtcttcgctttcagtgcag
upper sequence: Vv06s0009g03650.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G120175_T03 (Zea mays), 5'ss of exon 3
TGATTGTGGGAGAGGTTGCTAATTTTGTGGCATATGCATTCGCCCCAGCTGTTCTTGTTACCCCTCTTGGGGCATTAAGTATCATTGTCAGgtaatcagtagtgcattcaatttctttatgagttaaca-ctcgaatggccttgttggttggtttatgat-----gttttgaatggttt---gctgcag-----
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TGATTGTAGGTGAGATTGCCAATTTCGTGGCATATGCTTTCGCCCCCGCTGTTCTGGTTACTCCCCTTGGAGCACTCAGCATAATTGTTAGgttagctagctcaaatt---tctccttgcattctgacagttctatttatctttttagtcaagctataatttgacgttgagggtgtcttcacccttcagtgcag
upper sequence: Vv06s0009g03650.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G120175_T04 (Zea mays), 5'ss of exon 3
TGATTGTGGGAGAGGTTGCTAATTTTGTGGCATATGCATTCGCCCCAGCTGTTCTTGTTACCCCTCTTGGGGCATTAAGTATCATTGTCAGgtaatcagtagtgcattcaatttctttatgagttaaca-ctcgaatggccttgttggttggtttatgat-----gttttgaatggtttg---ctgcag
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TGATTGTAGGTGAGATTGCCAATTTCGTGGCATATGCTTTCGCCCCCGCTGTTCTGGTTACTCCCCTTGGAGCACTCAGCATAATTGTTAGgttagctagctcaaatt---tctccttgcattctgacagttctatttatctttttagtcaagctataatttgacgttgagggtgtcttcacccttcag
upper sequence: Vv06s0009g03650.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G44980.1 (Glycine max), 5'ss of exon 3
TGATTGTGGGAGAGGTTGCTAATTTTGTGGCATATGCATTCGCCCCAGCTGTTCTTGTTACCCCTCTTGGGGCATTAAGTATCATTGTCAGgtaatcagtagtgcattcaat-ttctttatgagttaa------------------cact--cga-atggccttgttggttggtttatgatgttttgaatggtttgctgcag
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TGATTGTAGGAGAGGTTGCAAACTTCGTTGCATATGCATTTGCTCCAGCAGTCCTAGTTACTCCTCTTGGTGCATTAAGTATTATTGTGAGgtattccccttaattttcattgttgattgagagttaaggtggcattagcttgtaacattggcgacataacatggttgcttcttcaatgatgttt-gcatggtatcctctag
upper sequence: Vv06s0009g03650.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA14G03790.1 (Glycine max), 5'ss of exon 3
TGATTGTGGGAGAGGTTGCTAATTTTGTGGCATATGCATTCGCCCCAGCTGTTCTTGTTACCCCTCTTGGGGCATTAAGTATCATTGTCAGgtaatc-----------------agtagtgcattcaatttct-ttatgagttaacact--cga-atggccttgttggttggtttatgatgttttgaatggtttgctgcag
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TGATTGCAGGAGAGGTTGCAAACTTTGTTGCATATGCGTTTGCTCCTGCAGTCCTAGTTACCCCTCTTGGTGCACTAAGTATTATTGTGAGgtattcccttaattttcattgttgattgagaattaaggtggtgctagcttctaacattggcgacataacatggttgcttcttcaatgatgttt-gcatggtatcctctagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718932|gb|FC067009.1|FC067009EST: GCCCCAGCTGTTCTTGTTACCCCTCTTGGGGCATTAAGTATCATTGTCAG TGCGGTGTTGGCACACTTTATCTTGAAGGAGAGGTTGCACAAACTAGGGAT
genomic: GCCCCAGCTGTTCTTGTTACCCCTCTTGGGGCATTAAGTATCATTGTCAGgtaatcagta ... tttgctgcagTGCGGTGTTGGCACACTTTATCTTGAAGGAGAGGTTGCACAAACTAGGGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGATTGTGGGAGAGGTTGCTAATTTTGTGGCATATGCATTCGCCCCAGCTGTTCTTGTTACCCCTCTTGGGGCATTAAGTATCATTGTCAGgtaatcagtagtgcattcaatttctttatgagttaacactcgaatggccttgttggttggtttatgatgttttgaatggtttgctgcag
- - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - GCTGTT