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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTACAGCTGTAAAAGTGGAACTAATCCATAGGCTAGTTTCTTGTGGATTGCCTGTTGTTGAGGCTACAAGTTTTGTGTCGCCAAAATGGGTACCTCAGgtaattcagatgccatttcttttttgttctttaaggcaccagttttactgattataaattcagtattgtgcgttttatgttgacttcttaaatttacatg...

Basic information

species Vitis vinifera
transcript Vv06s0009g02640.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0009g02640.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os01g16350.1 (Oryza sativa), 5'ss of exon 3
ACCTACAGCTGTAAAAGTGGAACTAATCCATAGGCTAGTTTCTTGTGGATTGCCTGTTGTTGAGGCTACAAGTTTTGTGTCGCCAAAATGGGTACCTCAGgtaattcagatgccatttcttttttgttctttaaggcaccagttttactgattataaattcagtattgtgcgttttatgttgacttcttaaatttacatg-
 || |||  ||||||  | ||||| || || || || |   | | ||||||  | ||||||||||| || |||||||| || |||||||||||||| |||||||||  | |        |    ||   ||  |  |     | ||||  ||      ||   |||| |     | |   |     | |   |||  ||  
TCCAACACATGTAAAGATTGAACTCATACAGAGACTGGCAACCTCTGGATTATCGGTTGTTGAGGCAACTAGTTTTGTCTCTCCAAAATGGGTACCACAGgtaattttggtttagcaattagcatgca-ttagatacttgcttcttacacatatacggtttgatattttaaagatcaccatccacccatttttttctataa

upper sequence: Vv06s0009g02640.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os12g04020.1 (Oryza sativa), 5'ss of exon 4
ACCTACAGCTGTAAAAGTGGAACTAATCCATAGGCTAGTTTCTTGTGGATTGCCTGTTGTTGAGGCTACAAGTTTTGTGTCGCCAAAATGGGTACCTCAGgtaatt---cagat--gccatttcttttttgttctttaaggcaccagttttactgattataaattcagt-attgt-gcgttttatgttgacttcttaaatttacatg
||| ||| |||||||  | ||||| || || |   | ||  ||| |||  |  | || ||||| || |||||||||||||| ||||||||||| || |||||||||    ||||  |         | |  |  | | |  ||  | ||| | | |     | || ||  |||||  || |   | |||| || ||   |       
ACCCACATCTGTAAAGATTGAACTGATACACAAATTGGTGGCTTCTGGTCTATCAGTAGTTGAAGCCACAAGTTTTGTGTCCCCAAAATGGGTGCCACAGgtaattacttagattaggtgaaggcgtgtactagtatcatacattaatttaaatcacagacatttgagagattgtcacgatagctcttgatttgtttttt-------

upper sequence: Vv06s0009g02640.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G175071_T01 (Zea mays), 5'ss of exon 3
ACCTACAGCTGTAAAAGTGGAACTAATCCATAGGCTAGTTTCTTGTGGATTGCCTGTTGTTGAGGCTACAAGTTTTGTGTCGCCAAAATGGGTACCTCAGgta-attcagatgccatttcttttttgttctttaaggcaccagttttactgattataaattcagtattgtgcgttt-tatgttgacttcttaaatttacatg
 || ||| ||||||| || || || || |  ||  | |   | | |||||| |||||||| ||||| || |||||||| || ||||||||||||||||||||| | |    | | |  ||| |   |  | || ||     |    |  |   | |  |   | | |    | ||  | |  | |   |    |||||||  
GCCAACACCTGTAAAGGTTGAGCTTATACGAAGATTGGCCACATCTGGATTACCTGTTGTGGAGGCAACGAGTTTTGTATCTCCAAAATGGGTACCTCAGgtatagtgctttacaaaatctctggagaacattcagattagacacctgttttatctgcacctattgt-acacattgattttctcaggaccctgatttacaa-

upper sequence: Vv06s0009g02640.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G44610.1 (Glycine max), 5'ss of exon 4
ACCTACAGCTGTAAAAGTGGAACTAATCCATAGGCTAGTTTCTTGTGGATTGCCTGTTGTTGAGGCTACAAGTTTTGTGTCGCCAAAATGGGTACCTCAGgt--aattcagatgccat-ttcttttttgttctttaaggc--accagttttactgattataaattcagtattgtgcgttttatgttgacttc--------ttaaatttacatg--------------------------------
|||||| ||||||||  | ||| | || || || |||| ||||  |||  |  ||||| ||||||||||||||||||| || || |||||||| || |||||  |||   ||    |  || ||| ||||   || |     |  | ||| |    | ||   |  ||||   |    | || ||||  ||         |||  |  |  ||                                
ACCTACTGCTGTAAAGATTGAATTGATTCACAGACTAGCTTCTACTGGGCTATCTGTTATTGAGGCTACAAGTTTTGTTTCTCCCAAATGGGTCCCACAGgtataataatgactttaccttatttcttgtaacttgacattgatgattttcaagagtgatggctggagtaa-attttctctaagttgcttttggatgacattagttccatctgattttaaatcataatgtttctttgtcttatag

upper sequence: Vv06s0009g02640.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT2G26800.3 (Arabidopsis thaliana), 5'ss of exon 4
ACCTACAGCTGTAAAAGTGGAACTAATCCATAGGCTAGTTTCTTGTGGATTGCCTGTTGTTGAGGCTACAAGTTTTGTGTCGCCAAAATGGGTACCTCAGgtaattcag--atgccatttcttttttgttctttaaggcaccagttttactgatta-taaattcagta-ttgtgcgttttatgttgacttcttaaatttacatg
||| ||| ||||||| ||||||||||| || ||  ||||||||| ||||||||||||||| ||||||||||||||||| || ||||| ||||| || |||||||| | |  ||||   |   | |   || | |    |   |  ||| ||| ||  |  |||   || ||  || | | | |    |   || ||   |    
ACCCACATCTGTAAAGGTGGAACTAATTCAGAGATTAGTTTCTTCTGGATTGCCTGTTGTCGAGGCTACAAGTTTTGTATCACCAAAGTGGGTTCCCCAGgtaatgctgttatgctggtgtatataaattatatctttcctgaactttcctgtttggtgtattgtataattaagcatataaagcgaccactttgaagaaa----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110703203|gb|EE079843.1|EE079843
EST:     TGCCTGTTGTTGAGGCTACAAGTTTTGTGTCGCCAAAATGGGTACCTCAG                         TTAGCAGATGCAAAGGATGTAATGGAAGCAGTTCGGAATTTGGAGGGTGCT
genomic: TGCCTGTTGTTGAGGCTACAAGTTTTGTGTCGCCAAAATGGGTACCTCAGgtaattcaga ... cttgttacagTTAGCAGATGCAAAGGATGTTATGGAAGCAGTTCGGAATTTGGAGGGTGCT