Sequence
atgc intronic sequence ATGC exonic sequenceATGGGAAGAAAGCATTGTCATGGCTCCAAGGAACTCACGATTTGTATTCCTCTCAGCAACTGTGCCTAATGCAAAGGAATTCGCTGATTGGGTTGCAAAGgtgatttatgctttttaaatgtttcttgttaccatattatgaattgtgaaattagcttcggagatgatgaagatgggaaatatcctttctaggaactttg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0009g01750.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os12g18140.1 (Oryza sativa), 5'ss of exon 3
ATGGGAAGAAAGCATTGTCATGGCTCCAAGGAACTCACGATTTGTATTCCTCTCAGCAACTGTGCCTAATGCAAAGGAATTCGCTGATTGGGTTGCAAAGgtgattt---atgctt--tttaaatgtttcttgttaccatattatgaattgtgaaattagcttcggagatgatgaagatgggaaatatcctttctaggaactttg
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GTGGGAGGAAAGTATAGTGATGGCTCCTAAGAACTCACGTTTTGTGTTCCTCTCAGCTACCGTGCCTAATGCCAAGGAGTTTGCTGACTGGGTGGCTAAGgtttgttgccacgcttccctagaacacatttgatcaagcatttatcagcatttgatctatcttctttgaccataag-----------------------------
upper sequence: Vv06s0009g01750.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G040995_T01 (Zea mays), 5'ss of exon 3
ATGGGAAGAAAGCATTGTCATGGCTCCAAGGAACTCACGATTTGTATTCCTCTCAGCAACTGTGCCTAATGCAAAGGAATTCGCTGATTGGGTTGCAAAGgtgatttatgctttttaaatgtttcttgttaccatattatgaattgtgaaattagcttcggagatgatgaagatgggaaatatcctttctaggaactttg-----------------------------------------
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------------TATAGTGATGGCTCCCAAGAATTCACGCTTTGTCTTCCTCTCGGCAACTGTACCTAATGCCAAGGAGTTCGCTGATTGGGTAGCTAAGGTCTGTTCCCAAgtgtgcctatttgtctccatgtttctgttg-ccatgattttggatttgaac-tcatgtatttgttaaaaggcgtctatagacatggtcaagcattcacacatgctttaagaacatatgctatttttcag
upper sequence: Vv06s0009g01750.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G040995_T02 (Zea mays), 5'ss of exon 3
ATGGGAAGAAAGCATTGTCATGGCTCCAAGGAACTCACGATTTGTATTCCTCTCAGCAACTGTGCCTAATGCAAAGGAATTCGCTGATTGGGTTGCAAAGgtgatttatgctttttaaatgtttcttgttaccatattatgaattgtgaaattagcttcggagatgatgaagatgggaaatatcctttctaggaactttg-----------------------------------------
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TTGGGAGGAGAGTATAGTGATGGCTCCCAAGAATTCACGCTTTGTCTTCCTCTCGGCAACTGTACCTAATGCCAAGGAGTTCGCTGATTGGGTAGCTAAGgtctgttcccaagtgtgcctatttgtctccatgtttctgttg-ccatgattttggatttgaac-tcatgtatttgttaaaaggcgtctatagacatggtcaagcattcacacatgctttaagaacatatgctatttttcag
upper sequence: Vv06s0009g01750.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G59760.1 (Arabidopsis thaliana), 5'ss of exon 3
ATGGGAAGAAAGCATTGTCATGGCTCCAAGGAACTCACGATTTGTATTCCTCTCAGCAACTGTGCCTAATGCAAAGGAATTCGCTGATTGGGTTGCAAAGgtgatttatgctttttaaatgtttcttgttaccatattatgaattgtgaaattagcttcggagatgatgaagatgggaaatatcctttctaggaactttg--
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TTGGGAAGAGAGTATTGTAATGGCTCCGAAGAATTCTCGTTTTGTGTTTCTATCGGCAACAGTTCCCAATGCCAAGGAGTTTGCTGATTGGGTTGCAAAGgtatttcactcttgcta--ctccttctacctctcttttgtgaatggattgatacatttttgtatcaacttgtaattatgatttcacatcaattatttatttt
upper sequence: Vv06s0009g01750.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ21372 (Selaginella moellendorffii), 5'ss of exon 3
ATGGGAAGAAAGCATTGTCATGGCTCCAAGGAACTCACGATTTGTATTCCTCTCAGCAACTGTGCCTAATGCAAAGGAATTCGCTGATTGGGTTGCAAAGgtg--atttatgctttttaaatgtttcttgttaccatattatgaattgtgaaattagcttcggagatgatgaagatgggaaatatcctttctaggaactttg
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GTGGGAAGAAAGCATTGTCATGGCTCCTAAGAACGCCCGTTTTGTTTTTCTATCAGCGACGGTGCCAAATGCTAAAGAATTCGCTGACTGGGTTGCAAAGgtacagtcctcacgctttgaat-----ttggcagaatgtgctga--tgtattact-gcctcacag-------------------------------------
upper sequence: Vv06s0009g01750.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ23732 (Selaginella moellendorffii), 5'ss of exon 3
ATGGGAAGAAAGCATTGTCATGGCTCCAAGGAACTCACGATTTGTATTCCTCTCAGCAACTGTGCCTAATGCAAAGGAATTCGCTGATTGGGTTGCAAAGgtg--atttatgctttttaaatgtttcttgttaccatattatgaattgtgaaattagcttcggagatgatgaagatgggaaatatcctttctaggaactttg
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GTGGGAAGAAAGCATTGTCATGGCTCCTAAGAACGCCCGTTTTGTTTTTCTATCAGCGACGGTGCCAAATGCTAAAGAATTCGCTGACTGGGTTGCAAAGgtacagtcctcacgctttgaat-----ttggcagaatgtgctga--tgtattact-gcttcacag-------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32456560|gb|CD797734.1|CD797734EST: TCTCAGCAACTGTGCCTAATGCAAAGGAATTCGCTGATTGGGTTGCAAAG GTCCATCAGCAACCGTGTCACATTGTTTATACTGATTATCGGCCAACACCA
genomic: TCTCAGCAACTGTGCCTAATGCAAAGGAATTCGCTGATTGGGTTGCAAAGgtgatttatg ... cagaatgcagGTCCATCAGCAACCGTGTCACATTGTTTATACTGATTATCGGCCAACACCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGGGAAGAAAGCATTGTCATGGCTCCAAGGAACTCACGATTTGTATTCCTCTCAGCAACTGTGCCTAATGCAAAGGAATTCGCTGATTGGGTTGCAAAGgtgatttatgctttttaaatgtttcttgttaccatattatgaattgtgaaattagcttcggagatgatgaagatgggaaatatcctttctaggaactttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaata