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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAAAGGATAGTCTTGGTGAAGATGTTGTTAAACCATATACTCCAACCACTTTAGATTCAGATCTTGGATACTTTGAACTCGTTATAAAGgttcttaaacactcaaatattccaatgttttgatacactgtcatcatttatttctctttttcccccttttttgattttaatttctcttaagggtag

Basic information

species Vitis vinifera
transcript Vv06s0009g01710.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0009g01710.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G05640.1 (Glycine max), 5'ss of exon 3
GGGAAAGGATAGTCTTGGTGAAGATGTTGTTAAACCATATACTCCAACCACTTTAGATTCAGATCTTGGATACTTTGAACTCGTTATAAAGgttcttaaacactcaaatattccaatgttttgatacactgtcatcatttatttctctttttccccctt---ttttgattttaatttctcttaagggtag------------
 || |||||||||||||||||||| ||||| |||||||||||||| || || || ||| | ||| |||||||||||||| | ||| | |||||| ||   |||| |  | ||    | | |   |      | ||  |  |||| |  ||||   |  |   | |||| |||   | |   ||  | | |            
AGGGAAGGATAGTCTTGGTGAAGAAGTTGTGAAACCATATACTCCTACAACATTGGATACTGATGTTGGATACTTTGAATTGGTTGTGAAGgttatttgccact-atttttttttttttctcagtgtttgattattgtcaatttattatttttaactatagatattgacttttgctacctgtattgtttgtataataattag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110720681|gb|EE096826.1|EE096826
EST:     CTCCAACCACTTTAGATTCAGATCTTGGATACTTTGAACTCGTTATAAAG                         ATGTATCCACAAGGAAGGATGTCCCATCATTTTCGGGAGATGTGTGAAGGT
genomic: CTCCAACCACTTTAGATTCAGATCTTGGATACTTTGAACTCGTTATAAAGgttcttaaac ... ttaagggtagATGTATCCACAAGGAAGGATGTCCCATCATTTTCGGGAGATGTGTGAAGGT
EST: gi|33406066|gb|CF211693.1|CF211693
EST:     CTCCAACCACTTTAGATTCAGATCTTGGATACTTTGAACTCGTTATAAAG                         ATGTATCCACAAGGAAGGATGTCCCATCATTTTCGGGAGATGTGTGAAGGT
genomic: CTCCAACCACTTTAGATTCAGATCTTGGATACTTTGAACTCGTTATAAAGgttcttaaac ... ttaagggtagATGTATCCACAAGGAAGGATGTCCCATCATTTTCGGGAGATGTGTGAAGGT
EST: gi|33405978|gb|CF211605.1|CF211605
EST:     CTCCAACCACTTTAGATTCAGATCTTGGATACTTTGAACTCGTTATAAAG                         ATGTATCCACAAGGAAGGATGTCCCATCATTTTCGGGAGATGTGTGAAGGT
genomic: CTCCAACCACTTTAGATTCAGATCTTGGATACTTTGAACTCGTTATAAAGgttcttaaac ... ttaagggtagATGTATCCACAAGGAAGGATGTCCCATCATTTTCGGGAGATGTGTGAAGGT
EST: gi|71864812|gb|DT013867.1|DT013867
EST:     CTCCAACCACTTTAGATTCAGATCTTGGATACTTTGAACTCGTTATAAAG                         ATGTATCCACAAGGAAGGATGTCCCATCATTTTCGGGAGATGTGTGAAGGT
genomic: CTCCAACCACTTTAGATTCAGATCTTGGATACTTTGAACTCGTTATAAAGgttcttaaac ... ttaagggtagATGTATCCACAAGGAAGGATGTCCCATCATTTTCGGGAGATGTGTGAAGGT
EST: gi|110688836|gb|EE067844.1|EE067844
EST:     CTCCAACCACTTTAGATTCAGATCTTGGATACTTTGAACTCGTTATAAAG                         ATGTATCCACAAGGAAGGATGTCCCATCATTTTCGGGAGATGTGTGAAGGT
genomic: CTCCAACCACTTTAGATTCAGATCTTGGATACTTTGAACTCGTTATAAAGgttcttaaac ... ttaagggtagATGTATCCACAAGGAAGGATGTCCCATCATTTTCGGGAGATGTGTGAAGGT
EST: gi|110718332|gb|EE095045.1|EE095045
EST:     CTCCAACCACTTTAGATTCAGATCTTGGATACTTTGAACTCGTTATAAAG                         ATGTATCCACAAGGAAGGATGTCCCATCATTTTCGGGAGATGTGTGAAGGT
genomic: CTCCAACCACTTTAGATTCAGATCTTGGATACTTTGAACTCGTTATAAAGgttcttaaac ... ttaagggtagATGTATCCACAAGGAAGGATGTCCCATCATTTTCGGGAGATGTGTGAAGGT