Sequence
atgc intronic sequence ATGC exonic sequenceATGGCTCTAATTGCGAGAATCCAACACCCTTACATTGTTGAATTTAAGGAAGCATGGGTAGAGAAGgtaggtcctggaaattctagttttttgacgaatttttttgctgtaaatgcgaccttgtactgaatcgagagctttgggttggaatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0009g00690.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os01g64490.1 (Oryza sativa), 5'ss of exon 4
ATGGCTCTAATTGCGAGAATCCAACACCCTTACATTGTTGAATTTAAGGAAGCATGGGTAGAGAAGgtaggtcctggaaattctagttttttgacgaatttttttgctgtaaatgcgaccttgtactgaatcgagagctttgggttggaatgcag
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ATGGCCCTTATTGCTCGCCTGCAACATCCTTACATTGTTGAGTTCAAGGAAGCATGGGTTGAGAAGgtttgctctcgaggaacacacacttatacacattttttatattttttttcaactttgt--ttagcttattttgtgagttttgacag---
upper sequence: Vv06s0009g00690.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os05g36960.1 (Oryza sativa), 5'ss of exon 3
ATGGCTCTAATTGCGAGAATCCAACACCCTTACATTGTTGAATTTAAGGAAGCATGGGTAGAGAAGgtaggtcctggaaattctagttttttgacgaatttttttgctgtaaatgcgaccttgtactgaatcgagagctttgggttgg-aatgcag
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ATGGCTCTGATTGCTCGGTTGCAACACCCTTACATTGTTGAATTCAAAGAGGCTTGGGTTGAGAAGgt---ttgtgga----ttaggaacttactatatctagcttatctgg-------tttatacttatttagttgacatgggtcagtaatgcag
upper sequence: Vv06s0009g00690.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G137118_T02 (Zea mays), 5'ss of exon 4
ATGGCTCTAATTGCGAGAATCCAACACCCTTACATTGTTGAATTTAAGGAAGCATGGGTAGAGAAGgtaggtcctggaaattctagttttttgacgaatttttttgctgtaaatgcgaccttgtactgaatcgagagctttgggttggaatgcag
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ATGGCTCTAATTGCTCGGCTGCAGCACCCTTACATTGTTGAATTCAAGGAGGCTTGGGTTGAGAAGgt-----tttgtagttcaggaacttgttcttaccttgtttct-tctgtttgaacttat--ttagttgacaaggt-gagtt---atgcag
upper sequence: Vv06s0009g00690.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA12G09910.1 (Glycine max), 5'ss of exon 3
ATGGCTCTAATTGCGAGAATCCAACACCCTTACATTGTTGAATTTAAGGAAGCATGGGTAGAGAAGgt--aggtcctggaaattctagt---------tttttgacgaatttttttgctgt-aaatgcgaccttgtactgaatcgagagctttgggttggaatgcag-----------------------------------------------------
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ATGGCTCTTATTGCTCGAATCCAGCACCCTTACATTGTGGAATTCAAGGAGGCATGGGTTGAGAAGgtgaagacccttaaaatttttgtataatgtaatcatagacttagtttctttcagttaattgttaatagttacagtattgcaatctctgttgtgaactagaagtgtgagaataatgactgtttacttttctgctaagcacattctactgttgcag
upper sequence: Vv06s0009g00690.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G18340.1 (Glycine max), 5'ss of exon 3
ATGGCTCTAATTGCGAGAATCCAACACCCTTACATTGTTGAATTTAAGGAAGCATGGGTAGAGAAGgt---aggtcctggaaattctagttt--tttgacgaatttttttgctgtaaatgcgaccttgtactga--atcgagagct-ttgggttggaatgcag----------------
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ATGGCTCTTATTGCTCGAATCCAGCACCCTTACATTGTGGAATTCAAGGAGGCATGGGTTGAGAAGgtgagagaccctttaagtttttgtgtaatgtaatcatagtcttaatagttactacagtattgaactctctgttgtaaactatttctgctaagcacattctacttctgttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71862067|gb|DT011122.1|DT011122EST: GAATCCAACACCCTTACATTGTTGAATTTAAGGAAGCATGGGTAGAGAAG GGTTGCTATGTTTGCATTGTCACTGGATATTGTGAAGGAGGAGACAT
genomic: GAATCCAACACCCTTACATTGTTGAATTTAAGGAAGCATGGGTAGAGAAGgtaggtcctg ... tggaatgcagGGTTGCTATGTTTGCATTGTCACTGGATATTGTGAAGGAGGAGACAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGGCTCTAATTGCGAGAATCCAACACCCTTACATTGTTGAATTTAAGGAAGCATGGGTAGAGAAGgtaggtcctggaaattctagttttttgacgaatttttttgctgtaaatgcgaccttgtactgaatcgagagctttgggttggaatgcag
- - - - - - - - - - - - - - - - - - - - - - AAGGAA