1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGGGAATGATCCAGCACAATGCTTGGAGACCACAGAGAGGACTTCCTGAGAGAGCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTTCACCCgtaaggacttactatacttgtcaacatcacacacaattgtattgcactatcaacacggtattttgcacatgggttcatgtttaacgttatctgctggagttttgcag
species | Vitis vinifera |
transcript | Vv06s0009g00410.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGAGCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTTCACCC CTATCCTAAGGATTCCGACAAACACATGCTTGCGAAACAAACGGGGCTTACEST: gi|32269940|gb|CD719099.1|CD719099
genomic: AGAGCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTTCACCCgtaaggactt ... agttttgcagCTATCCTAAGGATTCCGACAAACACATGCTTGCCAAACAAACGGGGCTTAC
EST: AGAGCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTTCACCC CTATCCTAAGGATTCCGACAAACACATGCTTGCGAAACAAACGGGGCTTACEST: gi|110693884|gb|EE070506.1|EE070506
genomic: AGAGCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTTCACCCgtaaggactt ... agttttgcagCTATCCTAAGGATTCCGACAAACACATGCTTGCCAAACAAACGGGGCTTAC
EST: AGAGCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTTCACCC CTATCCTAAGGATTCCGACAAACACATGCTTGCGAAACAAACGGGGCTTACEST: gi|32269627|gb|CD718786.1|CD718786
genomic: AGAGCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTTCACCCgtaaggactt ... agttttgcagCTATCCTAAGGATTCCGACAAACACATGCTTGCCAAACAAACGGGGCTTAC
EST: AGAGCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTTCACCC CTATCCTAAGGATTCCGACAAACACATGCTTGCGAAACAAACGGGGCTTACEST: gi|71871047|gb|DT020102.1|DT020102
genomic: AGAGCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTTCACCCgtaaggactt ... agttttgcagCTATCCTAAGGATTCCGACAAACACATGCTTGCCAAACAAACGGGGCTTAC
EST: AGAGCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTTCACCC CTATCCTAAGGATTCCGACAAACACATGCTTGCGAAACAAACGGGGCTTACEST: gi|32268362|gb|CD717521.1|CD717521
genomic: AGAGCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTTCACCCgtaaggactt ... agttttgcagCTATCCTAAGGATTCCGACAAACACATGCTTGCCAAACAAACGGGGCTTAC
EST: AGAGCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTTCACCC CTATCCTAAGGATTCCGACAAACACATGCTTGCGAAACAAACGGGGCTTAC
genomic: AGAGCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTTCACCCgtaaggactt ... agttttgcagCTATCCTAAGGATTCCGACAAACACATGCTTGCCAAACAAACGGGGCTTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGAATGATCCAGCACAATGCTTGGAGACCACAGAGAGGACTTCCTGAGAGAGCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTTCACCCgtaaggacttactatacttgtcaacatcacacacaattgtattgcactatcaacacggtattttgcacatgggttcatgtttaacgttatctgctggagttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT