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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCATTGATGAGGTTGATGCTATTGCTACCGCTAGGTTTGATGCCCAAACTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAGgtaggtttaaaaggatatggatcttatagagatatggatttaattaaaaaaaaggcctgaaaatcagttgttaactggggatgccaaaaaaaaagggctttgattaatttgtctgttgattacagcatgtacttgcttctattgttagctaaaaatgtttaactttttggatttgggtctaaattcttctccag

Basic information

species Vitis vinifera
transcript Vv06s0004g08220.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g08220.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os02g21970.1 (Oryza sativa), 5'ss of exon 3
CTTCATTGATGAGGTTGATGCTATTGCTACCGCTAGGTTTGATGCCCAAACTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAGgtaggtttaaaaggatatggatcttatagagatatggatttaattaaaaaaaaggcctgaaaatcagttgttaactggggatgccaaaaaaaaagggctttgattaatttgtctgttgattacagcatgtacttgcttctattgttagctaaaaatgtttaactttttggatttgggtctaaattcttctccag
 ||||| ||||||||||||||||| || || ||| | |||||||| || ||||| |||||  ||||||||||||| || || ||||| || |||||||||||| | || |  |     |||| |     |||||      |  |  | |||     ||||| ||  |||| |         ||  |||    ||  |||  |    |    |   || |                                                                           
ATTCATCGATGAGGTTGATGCTATAGCAACTGCTCGTTTTGATGCTCAGACTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAGgtaaggtttattgttgtaggatatctgtaagatac-----ttgtggagaaa-----ctgaatatttgttgct---------tgttaaatttgaatagctcagccatacccatacattta---------------------------------------------------------------------------

upper sequence: Vv06s0004g08220.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G090904_T01 (Zea mays), 5'ss of exon 3
CTTCATTGATGAGGTTGATGCTATTGCTACCGCTAGGTTTGATGCCCAAACTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAGgtaggtttaaaaggatatggatcttatagagatatggatttaattaaaaaaaaggcctgaaaatcagttgttaactggggatgccaaaaaaaaagggctttgattaatttgtctgttg-attacagcatgtacttgcttctattgttagctaaaaatgtttaactttttggatttgggtctaaattcttctccag
 ||||||||||||||||||||||| || || ||| | |||||||| || ||||| |||||  ||||||||||||| || || |||||||| ||||||||||||    |         | | | ||||| ||||  ||||  | ||  |     ||| | |||   | || |||       |||  | |||  |      || |  || |   |||  | |||| |                                                                      
TTTCATTGATGAGGTTGATGCTATAGCCACTGCTCGTTTTGATGCTCAGACTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAGCTACTCAATCAGgtaaagct---------tagctattata-agatcaggatggacttttag----ggcttaaaag--atttattact-----atgttagaaagta------tttagcaactgacctgaagcattaaaaa--------------------------------------------------------------------

upper sequence: Vv06s0004g08220.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G038126_T01 (Zea mays), 5'ss of exon 3
CTTCATTGATGAGGTTGATGCTATTGCTACCGCTAGGTTTGATGCCCAAACTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAGgtag-gtttaaaaggatatggatcttatagagat--atggatttaattaaaaaaaaggcctgaaaatcagttgttaactggggatgccaaaaaaaaagggctttgattaatttgtctgttgattacagcatgtacttgcttctattgttagctaaaaatgtttaactttttggatttgggtctaaattcttctccag
 ||||||||||||||||||||||| || || ||| | |||||||| || ||||| |||||  |||||||||| || || || |||||||| ||||||||||||  | |||     ||   || ||| ||| | |  |  | |||| |     |  | |   |||||| | ||   ||| ||      |||| |   | |   ||  ||                                                                                         
TTTCATTGATGAGGTTGATGCTATAGCCACTGCTCGCTTTGATGCTCAGACTGGTGCTGACCGAGAAGTTCAACGCATTCTTATGGAGCTACTCAATCAGgtaaagcttagctacatgatgaacttttaggggttaacaggtttatt-----actatgttagaaaat-atttagcaacagg---cctcaaacattgaagttgttatttg----------------------------------------------------------------------------------------

upper sequence: Vv06s0004g08220.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G31470.1 (Glycine max), 5'ss of exon 3
CTTCATTGATGAGGTTGATGCTATTGCTACCGCTAGGTTTGATGCCCAAACTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAGgtaggtttaaaaggatatggatcttatagagatatggatttaat-taaaaaaaaggcctgaaaatcagttgttaactggg-gatgccaaaaaaaaagggctttgattaa--tttgtctgttgattacagcatgtacttgcttctattgttagctaaaaatgtttaactttttggatttgg-gtctaaattcttctccag
 || ||||||||||||||||| || || || ||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||  | |||||||||  | | ||| |||||  || |||  | | | ||  |    | | |  |  |    |    |  | ||  | |  ||  | ||  ||  |      | ||   ||||  | |  || ||   |   || |  |||| | | |  | |||| ||    | | | |  | |||| ||      ||    | |||| |||
ATTTATTGATGAGGTTGATGCAATAGCCACTGCTAGATTTGATGCCCAAACTGGAGCTGATAGAGAAGTACAGCGTATCCTTATGGAACTTTTGAATCAGgtatctatgaaatgatatttatgtta-ggtgctgtgagtaggttgttactactattagtagttactaatttctgatgggctgctgtgaattagtttttgtttctcttaacctctagctatttggttgggc-tacacttccctatgattttagatat---tttctgaagtgttggtttaattacctgttcttttcttcag

upper sequence: Vv06s0004g08220.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G31450.1 (Glycine max), 5'ss of exon 3
CTTCATTGATGAGGTTGATGCTATTGCTACCGCTAGGTTTGATGCCCAAACTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAGgtaggtttaaaaggatatggatcttatagagatatggatttaattaaaaaaaaggcctgaaaatcagttgttaactggggatgccaaaaaaaaagggctttgattaatttgtctgttgattaca-gcatgtact-tgcttctat-tgttagctaaaaatgtttaactttttggatttgg-gtctaaattcttctccag
 || ||||||||||||||||| || || || ||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||  | |||||||||  | | ||| |||||   | |||  | | | ||  | |  |   |  |      |   | | | |  ||      || |||     |  |     | |   |   ||  |   |   ||   |  || |||   ||||| | || |     | | | | | |  | |||| ||      ||    | |||| |||
ATTTATTGATGAGGTTGATGCAATAGCCACGGCTAGATTTGATGCCCAAACTGGAGCTGATAGAGAAGTACAGCGTATCCTTATGGAACTTTTGAATCAGgtatctatgaaatgatatttctatta-ggtgctgtgagtatgttgttactacta--ttagtagttactaatttctgctggctgctgtgtattagtttttgtttatctcttaccctctagctatttggttggactacacttctctatgattttagatattctctgaagtgttggtttaattacctgttcttttcttcag

upper sequence: Vv06s0004g08220.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA18G05730.1 (Glycine max), 5'ss of exon 3
-CTTCATTGATGAGGTTGATGCTATTGCTACCGCTAGGTTTGATGCCCAAACTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAGgtaggtttaaaaggatatggatcttatagagatatggatttaattaaaaaaaaggcctgaaaatcagttgttaactggggatgccaaaaaaaaagggctttgattaatttgtctgt---tgattacagcatgtacttgcttctattgttagctaaaaatgtttaactttttggatttgggtctaaattcttctccag
  || ||||||||||||||||| || || || ||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||  | ||||||||   | | ||| |||||   |  | |     | ||   |||  |            | |  |     |  || ||   || ||   |   ||   | ||| | | || | |   |   || |||     | || || |  || || ||  ||| |                                         
TATTTATTGATGAGGTTGATGCAATAGCCACTGCTAGATTTGATGCCCAAACTGGAGCTGATAGAGAAGTACAGCGTATCCTTATGGAACTTTTGAATCAggtgtctatgaaatgatat---ttctgttagcttctgtgattatgttttgtgctactattagtacttactaatatctcccga-gctgcagtgaatcagttttcacttatctcttaatctctggttatttggtttaattac--ctgttcttttctaca-----------------------------------------

upper sequence: Vv06s0004g08220.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G58290.1 (Arabidopsis thaliana), 5'ss of exon 3
CTTCATTGATGAGGTTGATGCTATTGCTACCGCTAGGTTTGATGCCCAAACTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAGgtaggtttaaaaggatatggatctta-tagagatatggatttaat----taaaaaaaaggcctgaaaatcagttgttaactggggatgccaaaaaaaaagggctttgattaatttgtctgttgattacagcatgtacttgcttctattgttagctaaaaatgtttaactttttggatttgggtctaaattcttctccag
||||||||||||||| ||||| || ||||| |||||||||||||| ||||| ||||| ||||| ||||||||||| || ||||||||||| || ||||||||  |   |||     ||| || ||| | |  ||   ||| | ||    || || || ||  |  |  |  ||  ||||||     ||   ||    | |                                                                                                   
CTTCATTGATGAGGTAGATGCCATCGCTACTGCTAGGTTTGATGCTCAAACAGGAGCCGATAGGGAAGTTCAGCGTATTCTCATGGAGCTTCTTAATCAGgtgagaacaaata---atgaattttagttgtaattcagatcttatgttgtagaataatggattttagttgtgtccttaacttattgtgttgaattcgatgtag------------------------------------------------------------------------------------------------

upper sequence: Vv06s0004g08220.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S79_171V6.1 (Physcomitrella patens), 5'ss of exon 3
CTTCATTGATGAGGTTGATGCTATTGCTACCGCTAGGTTTGATGCCCAAACTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAGgtaggtttaaaaggatatggatcttatagagatatggatttaattaaaaaaaaggcctgaaaatcagttgttaactggggatgccaaaaaaaaagggctttgattaatttgtctgttgattacagcatgtacttgcttctattgttagctaaaaatgtttaactttttggatttgggtctaaattcttctccag
||||||||||||| ||||||| ||||| || ||| | |||||||| ||||| ||||| ||||| || |||||||| ||| | ||||||||| | || |||    |||| | |    ||   || | | |  || || |            ||    ||| |  ||| |  ||    | |  ||  |||  |   |     | | | | |  |||   || ||                                                                        
CTTCATTGATGAGATTGATGCAATTGCGACAGCTCGTTTTGATGCTCAAACCGGAGCAGATAGGGAGGTTCAGCGTATCTTGATGGAGCTCTTGAACCAG-

upper sequence: Vv06s0004g08220.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S36_183V6.1 (Physcomitrella patens), 5'ss of exon 3
CTTCATTGATGAGGTTGATGCTATTGCTACCGCTAGGTTTGATGCCCAAACTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAGgtaggtttaaaa---ggatatggatcttataga-gatatggat--ttaattaaaaaaaaggcctgaaaatcagttgttaactggggatgccaaaaaaaaagggctttgattaatttgtctgttgattacagcatgtacttgcttctattgttagctaaaaatgtttaactttttggatttgggtctaaattcttctccag
 || ||||||||| ||||||| ||||| || ||| | ||||| || ||||||||||| ||||| ||||||||||| ||| | ||||||||  | |||||||||    | |     ||   |  ||  |||  | |||||||||   ||  |   |    |||    |   |  |||| ||||    ||||      | |   |  ||||                                                                                           
ATTTATTGATGAGATTGATGCAATTGCAACAGCTCGTTTTGACGCTCAAACTGGAGCAGATAGGGAAGTTCAGCGTATCTTGATGGAGCTTTTGAATCAGgtataactgatttttggtagtctattctatccatgatatggatacctacgttggattgtggcagtgagtccgattgtaaact----atgc-----gagagttgtgttga-------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352764633|gb|FQ469708.1|FQ469708
EST:     CTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAG                         ATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAAT
genomic: CTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAGgtaggtttaa ... tcttctccagATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAAT
EST: gi|110408764|gb|EC974405.1|EC974405
EST:     CTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAG                         ATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAAT
genomic: CTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAGgtaggtttaa ... tcttctccagATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAAT
EST: gi|37184209|gb|CF603563.1|CF603563
EST:     CTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAG                         ATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAAT
genomic: CTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAGgtaggtttaa ... tcttctccagATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAAT
EST: gi|110716340|gb|EE091246.1|EE091246
EST:     CTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAG                         ATGGATGGGTTTGACCAAACTGTGAATGTTAAGGTCATAATGGCAACTAAT
genomic: CTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAGgtaggtttaa ... tcttctccagATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAAT
EST: gi|30298944|gb|CB975738.1|CB975738
EST:     CTGGGGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAG                         ATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAAT
genomic: CTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAGgtaggtttaa ... tcttctccagATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAAT
EST: gi|27583947|gb|CB006642.1|CB006642
EST:     CTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAG                         ATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAAT
genomic: CTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAGgtaggtttaa ... tcttctccagATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAAT
EST: gi|30330039|gb|CD013301.1|CD013301
EST:     CTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAG                         ATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAAT
genomic: CTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAGgtaggtttaa ... tcttctccagATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAAT
EST: gi|71888901|gb|DT037956.1|DT037956
EST:     CTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAG                         ATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAAT
genomic: CTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAGgtaggtttaa ... tcttctccagATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAAT
EST: gi|110361748|gb|EC925244.1|EC925244
EST:     CTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAG                         ATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAAT
genomic: CTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAGgtaggtttaa ... tcttctccagATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAAT
EST: gi|30329505|gb|CD012767.1|CD012767
EST:     CTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAG                         ATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAAT
genomic: CTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAGgtaggtttaa ... tcttctccagATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAAT
EST: gi|110712358|gb|EE089887.1|EE089887
EST:     CTGGAGCTGATANAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAG                         ATGGATGGGTTTGGAC-AGACTGTGAATGTTAAAGTCATAATGGGCA-CTA
genomic: CTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAGgtaggtttaa ... tcttctccagATGGATGGGTTTG-ACCAGACTGTGAATGTTAAGGTCATAATGG-CAACTA
EST: gi|71870890|gb|DT019945.1|DT019945
EST:     CAGCGAATCCTCATGGAGCTCCTCAATCAG                         ATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAAT
genomic: CAGCGAATCCTCATGGAGCTCCTCAATCAGgtaggtttaa ... tcttctccagATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAAT
EST: gi|110370231|gb|EC929168.1|EC929168
EST:     CTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAG                         ATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAAT
genomic: CTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAGgtaggtttaa ... tcttctccagATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAAT
EST: gi|110386625|gb|EC951239.1|EC951239
EST:     CTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAG                         ATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTTATAATGGCAACTAAT
genomic: CTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAGgtaggtttaa ... tcttctccagATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAAT
EST: gi|110406828|gb|EC972414.1|EC972414
EST:     CTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAG                         ATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAAT
genomic: CTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAGgtaggtttaa ... tcttctccagATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAAT
EST: gi|110693522|gb|EE069829.1|EE069829
EST:     CTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAG                         ATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAAT
genomic: CTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAGgtaggtttaa ... tcttctccagATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAAT
EST: gi|110411515|gb|EC977232.1|EC977232
EST:     CTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAG                         ATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAAT
genomic: CTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAGgtaggtttaa ... tcttctccagATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAAT
EST: gi|29782278|gb|CB347461.2|CB347461
EST:     CTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAG                         ATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAAT
genomic: CTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAGgtaggtttaa ... tcttctccagATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAAT
EST: gi|30298889|gb|CB975683.1|CB975683
EST:     CTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAG                         ATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAAT
genomic: CTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAGgtaggtttaa ... tcttctccagATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAAT
EST: gi|110413373|gb|EC979155.1|EC979155
EST:     CTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAG                         ATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAAT
genomic: CTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAGgtaggtttaa ... tcttctccagATGGATGGGTTTGACCAGACTGTGAATGTTAAGGTCATAATGGCAACTAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTCATTGATGAGGTTGATGCTATTGCTACCGCTAGGTTTGATGCCCAAACTGGAGCTGATAGAGAAGTTCAGCGAATCCTCATGGAGCTCCTCAATCAGgtaggtttaaaaggatatggatcttatagagatatggatttaattaaaaaaaaggcctgaaaatcagttgttaactggggatgccaaaaaaaaagggctttgattaatttgtctgttgattacagcatgtacttgcttctattgttagctaaaaatgtttaactttttggatttgggtctaaattcttctccag

- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC