1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGGAGATATACTTGATCGAGGAGAAGATGAAATAGCTATCTTATCCTTATTGCGGTCATTGGATATCCAGGCGAAAGCTAGTGGTGGAGCAGTTTTCCAGgtttgtgcagctacaagtggagagactttttctgactgttgcacaaatattcatgatgctcaagttatcatgtctatatttttgtatttgatttgcttgt...
species | Vitis vinifera |
transcript | Vv06s0004g07390.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGCGGTCATTGGATATCCAGGCGAAAGCTAGTGGTGGAGCAGTTTTCCAG GTTAACGGAAATCATGAGACTATGAATGTGGAAGGGGATTTCAGATATGTTEST: gi|110371319|gb|EC935252.1|EC935252
genomic: TGCGGTCATTGGATATCCAGGCGAAAGCTAGTGGTGGAGCAGTTTTCCAGgtttgtgcag ... tatgatatagGTTAACGGAAATCATGAGACTATGAATGTGGAAGGGGATTTCAGATATGTT
EST: TGCGGTCATTGGATATCCAGGCGAAAGCTAGTGGTGGAGCAGTTTTCCAG GTTAACGGAAATCATGAGACTATGAATGTGGAAGGGGATTTCAGATATGTTEST: gi|71864691|gb|DT013746.1|DT013746
genomic: TGCGGTCATTGGATATCCAGGCGAAAGCTAGTGGTGGAGCAGTTTTCCAGgtttgtgcag ... tatgatatagGTTAACGGAAATCATGAGACTATGAATGTGGAAGGGGATTTCAGATATGTT
EST: TGCGGTCATTGGATATCCAGGCGAAAGCTAGTGGTGGAGCAGTTTTCCAG GTTAACGGAAATCATGAGACTATGAATGTGGAAGGGGATTTCAGATATGTTEST: gi|71864514|gb|DT013569.1|DT013569
genomic: TGCGGTCATTGGATATCCAGGCGAAAGCTAGTGGTGGAGCAGTTTTCCAGgtttgtgcag ... tatgatatagGTTAACGGAAATCATGAGACTATGAATGTGGAAGGGGATTTCAGATATGTT
EST: TGCGGTCATTGGATATCCAGGCGAAAGCTAGTGGTGGAGCAGTTTTCCAG GTTAACGGAAATCATGAGACTATGAATGTGGAAGGGGATTTCAGATATGTT
genomic: TGCGGTCATTGGATATCCAGGCGAAAGCTAGTGGTGGAGCAGTTTTCCAGgtttgtgcag ... tatgatatagGTTAACGGAAATCATGAGACTATGAATGTGGAAGGGGATTTCAGATATGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAGATATACTTGATCGAGGAGAAGATGAAATAGCTATCTTATCCTTATTGCGGTCATTGGATATCCAGGCGAAAGCTAGTGGTGGAGCAGTTTTCCAGgtttgtgcagctacaagtggagagactttttctgactgttgcacaaatattcatgatgctcaagttatcatgtctatatttttgtatttgatttgcttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagagac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcacaaa