1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCTCTCACATATCGTGAGGTCATTGCCATTTTGATGCAACGTCATGTTTTGGTTGATGGGAAGGTCAGGACCGATAAGACATATCCCTCAGGCTTCATGGgtatgcacactccaaccaatatacagccaattattctttgcatatttctttttgagagccttttttcacacaatctttgtaactttgcaatgagaaatat...
species | Vitis vinifera |
transcript | Vv06s0004g07150.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGTTGATGGGAAGGTCAAGACCGATAAGACATATCCCTCAGGCTTCATGG ATGTTGTGTCAATTCCTAAAACAAATGAGAACTTCCGTCTGCTTTACGACAEST: gi|30296893|gb|CB973687.1|CB973687
genomic: GGTTGATGGGAAGGTCAGGACCGATAAGACATATCCCTCAGGCTTCATGGgtatgcacac ... ctcattccagATGTTGTGTCAATTCCTAAAACAAATGAGAACTTCCGTCTGCTTTACGACA
EST: GGTTGATGGGAAGGTCAGGACCGATAAGACATATCCCTCAGGCTTCATGG ATGTTGTGTCAATTCCTAAAACAAATGAGAACTTCCGTCTGCTTTACGACAEST: gi|110701173|gb|EE078481.1|EE078481
genomic: GGTTGATGGGAAGGTCAGGACCGATAAGACATATCCCTCAGGCTTCATGGgtatgcacac ... ctcattccagATGTTGTGTCAATTCCTAAAACAAATGAGAACTTCCGTCTGCTTTACGACA
EST: GGTTGATGGGAAGGTCAGGACCGATAAGACATATCCCTCAGGCTTCATGG ATGTTGTGTCAATTCCTAAAACAAATGAGAACTTCCGTCTGCTTTACGACAEST: gi|161709159|gb|FC061369.1|FC061369
genomic: GGTTGATGGGAAGGTCAGGACCGATAAGACATATCCCTCAGGCTTCATGGgtatgcacac ... ctcattccagATGTTGTGTCAATTCCTAAAACAAATGAGAACTTCCGTCTGCTTTACGACA
EST: GGTTGATGGGAAGGTCAGGACCGATAAGACATATCCCTCAGGCTTCATGG ATGTTGTGTCAATTCCTAAAACAAATGAGAACTTCCGTCTGCTTTACGACAEST: gi|33406463|gb|CF212090.1|CF212090
genomic: GGTTGATGGGAAGGTCAGGACCGATAAGACATATCCCTCAGGCTTCATGGgtatgcacac ... ctcattccagATGTTGTGTCAATTCCTAAAACAAATGAGAACTTCCGTCTGCTTTACGACA
EST: GGTTGATGGGAAGGTCAGGACCGATAAGACATATCCCTCAGGCTTCATGG ATGTTGTGTCAATTCCTAAAACAAATGAGAACTTCCGTCTGCTTTACGACAEST: gi|110688373|gb|EE066853.1|EE066853
genomic: GGTTGATGGGAAGGTCAGGACCGATAAGACATATCCCTCAGGCTTCATGGgtatgcacac ... ctcattccagATGTTGTGTCAATTCCTAAAACAAATGAGAACTTCCGTCTGCTTTACGACA
EST: GGTTGATGGGAAGGTCAGGACCGATAAGACATATCCCTCAGGCTTCATGG ATGTTGTGTCAATTCCTAAAACAAATGAGAACTTCCGTCTGCTTTACGACAEST: gi|110700067|gb|EE077679.1|EE077679
genomic: GGTTGATGGGAAGGTCAGGACCGATAAGACATATCCCTCAGGCTTCATGGgtatgcacac ... ctcattccagATGTTGTGTCAATTCCTAAAACAAATGAGAACTTCCGTCTGCTTTACGACA
EST: GGTTGATGGGAAGGTCAGGACCGATAAGACATATCCCTCAGGCTTCATGG ATGTTGTGTCAATTCCTAAAACAAATGAGAACTTCCGTCTGCTTTACGACA
genomic: GGTTGATGGGAAGGTCAGGACCGATAAGACATATCCCTCAGGCTTCATGGgtatgcacac ... ctcattccagATGTTGTGTCAATTCCTAAAACAAATGAGAACTTCCGTCTGCTTTACGACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCTCACATATCGTGAGGTCATTGCCATTTTGATGCAACGTCATGTTTTGGTTGATGGGAAGGTCAGGACCGATAAGACATATCCCTCAGGCTTCATGGgtatgcacactccaaccaatatacagccaattattctttgcatatttctttttgagagccttttttcacacaatctttgtaactttgcaatgagaaatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaccaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgagaaa