1 5' 3' | 2 5' 3' | 3 5' 3' |
AGCTGCTATACCAAATGGGCCTTGCCCGTGAGCCGAACAATCCTCTTCTCCTCGCCAACTACGCCCAGTTCCTCTATCTCGTTGCGCACGACTATGACAGgtaaaagtcgcgtcaccctcctccattgccgagttaagtcggtgcccattctacgagtcaaaagatttgtagtctttttccaaatctccgatagagacgt...
species | Vitis vinifera |
transcript | Vv06s0004g06290.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTCGCCAACTACGCCCAGTTCCTCTATCTCGTTGCGCACGACTATGACAG AGCGGAGGAGTACTTCAAGAGAGCGATAGCGGTGGAGCCGCCGGATGCGGAEST: gi|110391742|gb|EC956741.1|EC956741
genomic: CTCGCCAACTACGCCCAGTTCCTCTATCTCGTTGCGCACGACTATGACAGgtaaaagtcg ... ttattcacagAGCGGAGGAGTACTTCAAAAGAGCGATAGCGGTGGAGCCGCCGGATGCGGA
EST: CTCGCCAACTACGCCCAGTTCCTCTATCTCGTTGCGCACGACTATGACAG AGCGGAGGAGTACTTCAAGAGAGCGATAGCGGTGGAGCCGCCGGATGCGGA
genomic: CTCGCCAACTACGCCCAGTTCCTCTATCTCGTTGCGCACGACTATGACAGgtaaaagtcg ... ttattcacagAGCGGAGGAGTACTTCAAAAGAGCGATAGCGGTGGAGCCGCCGGATGCGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTGCTATACCAAATGGGCCTTGCCCGTGAGCCGAACAATCCTCTTCTCCTCGCCAACTACGCCCAGTTCCTCTATCTCGTTGCGCACGACTATGACAGgtaaaagtcgcgtcaccctcctccattgccgagttaagtcggtgcccattctacgagtcaaaagatttgtagtctttttccaaatctccgatagagacgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatagaga