Sequence
atgc intronic sequence ATGC exonic sequenceTTTGCCTGCGTGGGGATATGGTTTGAGATACAGATATGGGCTGTTCAAGCAAAAGATCACGAAGGAGGGCCAAGAAGAAATTGCCGAAGATTGGCTTGAGgtttgatttcatctcaaatctgtgtctaaaattgtttattttatgaggttctcatgatgtgtaattatggtggttttatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g06020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os01g63270.1 (Oryza sativa), 5'ss of exon 3
TTTGCCTGCGTGGGGATATGGTTTGAGATACAGATATGGGCTGTTCAAGCAAAAGATCACGAAGGAGGGCCAAGAAGAAATTGCCGAAGATTGGCTTGAGgtttgatttcatct---caaatctgtgtctaaaattgtttattttatgaggttctcatgatgtgtaattatggtggttttatgcag
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TTTGCCTGCTTGGGGATATGGTCTGCGGTACCGATATGGTCTATTCAAACAATGCATCACCAAGGAAGGCCAGGAAGAAATTGCTGAAGATTGGCTTGAGgtaccaactggaatgtacacaagttcctctctcgtcatcagtttctctagctgctgctgatgagccac-atgtttatttctttcag
upper sequence: Vv06s0004g06020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G085577_T01 (Zea mays), 5'ss of exon 3
TTTGCCTGCGTGGGGATATGGTTTGAGATACAGATATGGGCTGTTCAAGCAAAAGATCACGAAGGAGGGCCAAGAAGAAATTGCCGAAGATTGGCTTGAGgtttga-tttcat---ctcaaatctgtgtctaaaattgtttattttatgaggttctcatg-atgtgtaattatggtggttttatgcag
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TTTGCCTGCTTGGGGCTATGGCCTGCGTTACCGATATGGACTGTTCAAACAACACATTGCCAAGGAGGGCCAGGAAGAAGTTGCAGAAGATTGGCTTGATgtatgaaccacaaatgctgaaatgcacatattattctgttgatatttttttcttgacatctataaccaatactcctttttttcttcag
upper sequence: Vv06s0004g06020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA18G07480.1 (Glycine max), 5'ss of exon 3
TTTGCCTGCGTGGGGATATGGTTTGAGATACAGATATGGGCTGTTCAAGCAAAAGATCACGAAGGAGGGCCAAGAAGAAATTGCCGAAGATTGGCTTGAGgtttgattt--------catctcaaatctgtgtc-taaaattgtttattttatgaggttctcatgatgtgtaattatggtggttttatgcag
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TTTGCCTTCTTGGGGGTATGGTTTGAGGTACAGATATGGGCTATTTAAGCAGAGAATCACCAGGGAAGGTCAGGAGGAAGTTGCAGAAGACTGGCTTGAGgtttggtttgcctcctttattttaaatctatggagctatttcacatatatcatgggatactgatg-tgtaaaatcaaatgaaaactaaacag
upper sequence: Vv06s0004g06020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT3G46970.1 (Arabidopsis thaliana), 5'ss of exon 4
TTTGCCTGCGTGGGGATATGGTTTGAGATACAGATATGGGCTGTTCAAGCAAAAGATCACGAAGGAGGGCCAAGAAGAAATTGCCGAAGATTGGCTTGAGgtttgatttcatctcaaatctgtgtctaaaattgtttattttatgaggttctcatgatgtgtaattatggtggttttatgcag
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TCTGCCTGCTTGGGGTTATGGTTTGAGGTACAGACATGGGTTGTTTAAGCAAATAATCACAAAGAAAGGTCAAGAAGAGATTCCAGAGGACTGGCTTGAGgt--gatgat-tgtcagtgtggtgatttcaacttatggttttctgagaactgtaactcatcctctattaatgggaatttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122689432|gb|EC939313.1|EC939313EST: AAAGGATCACGAAGGAGGGCCAAGAAGAAATTGCCGAAGATTGGCTTGAG AAGTTCAGTCCTTGGGAAGTTGTCAGGCATGATGTTGTATTTCCTGTCAGA
genomic: AAAAGATCACGAAGGAGGGCCAAGAAGAAATTGCCGAAGATTGGCTTGAGgtttgatttc ... ttttatgcagAAGTTCAGTCCTTGGGAAGTTGTCAGGCATGATGTTGTATTTCCTGTCAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTGCCTGCGTGGGGATATGGTTTGAGATACAGATATGGGCTGTTCAAGCAAAAGATCACGAAGGAGGGCCAAGAAGAAATTGCCGAAGATTGGCTTGAGgtttgatttcatctcaaatctgtgtctaaaattgtttattttatgaggttctcatgatgtgtaattatggtggttttatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA