Sequence
atgc intronic sequence ATGC exonic sequenceCGATTGGCAAATTTGATTGGATGTTGCTGTGAAGGGGAAGAGAGATTGCTTGTTGCGGAGTTCATGCCTAATGAAACTCTCTCAAAGCACCTTTTCCATTgtaaatttctttcaccaattctttagtagatctctctctcttcttattgtttgaatttgttgcggtaaaatgtattgcatataatgtgaatggctttttg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g05810.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA12G06200.1 (Glycine max), 5'ss of exon 3
CGATTGGCAAATTTGATTGGATGTTGCTGTGAAGGGGAAGAGAGATTGCTTGTTGCGGAGTTCATGCCTAATGAAACTCTCTCAAAGCACCTTTTCCATTgtaaatttctttcaccaattctttagtagatctctctctcttcttattgtttgaatttgttgcggtaaa-atgta--ttgcatataatgtgaatgg-ctttttg
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AGATTGGCTAACTTGGTTGGGTGTTGCTGTGAGGGAGAAGAGAGGTTGCTTGTGGCAGAGTTCATGCCCAATGAAACTCTCTCAAAACACCTTTTTCATTgtgagttt-tttctccatttgttt-gtttatctgttttacttttcttcagc--aatcaacaggagagaagatctaattttgatgtcattttgttaaacccccta
upper sequence: Vv06s0004g05810.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G41600.1 (Glycine max), 5'ss of exon 3
CGATTGGCAAATTTGATTGGATGTTGCTGTGAAGGGGAAGAGAGATTGCTTGTTGCGGAGTTCATGCCTAATGAAACTCTCTCAAAGCACCTTTTCCATTgtaaatttctttcaccaattctttagtagatctctctctcttcttattgtttgaatttgttgcggtaaaatg-tattgcatataatgtgaatggctttttg
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CGGTTGGCTAACTTGGTTGGTTGTTGCTGTGAAGGGGAAGAGAGATTGCTTGTTGCTGAGTTTATGCCAAATGAAACTCTCTCCAAACATCTCTTTCACTgtgagtttacacacaccgtcatgcatttcttcaactggtaaacagaatgctgacaatgatggatatggattgatgccacattttgtttaataaactaaat-
upper sequence: Vv06s0004g05810.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G14240.1 (Glycine max), 5'ss of exon 3
CGATTGGCAAATTTGATTGGATGTTGCTGTGAAGGGGAAGAGAGATTGCTTGTTGCGGAGTTCATGCCTAATGAAACTCTCTCAAAGCACCTTTTCCATTgtaaatttctttcaccaattctttagtagatctctctctcttcttattgtttg--aatttgttgcggtaaa-atgta--ttgcatataat---gtgaatggctttttg-----------------------------
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------------------------------------GAAGAAAGGTTGCTTGTGGCAGAGTTCATGCCCAATGAAACTCTCTCCAAACACCTTTTTCATTGTGAGCTTTTTTTTCCC-TCCATTTGTTTGTTTATCTgttttacttttcttcagcaatcaacaggagagaagatctaattttgatgtcattttgttaaaccccttatgtatttttgaatgatttgctttannnnnnn
upper sequence: Vv06s0004g05810.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S9_348V6.1 (Physcomitrella patens), 5'ss of exon 3
CGATTGGCAAATTTGATTGGATGTTGCTGTGAAGGGGAAGAGAGATTGCTTGTTGCGGAGTTCATGCCTAATGAAACTCTCTCAAAGCACCTTTTCCATTgtaaatttctttcaccaattctttagtagatctctctctcttcttattgtttgaatttgttgcggtaaaatgtattgca--tataatgtgaatggctttttg
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AGACTGGTGAATTTGATTGGATACTGCTGTGAAGGTGATGAGCGTTTGCTTGTTGCGGAGTATATGCCGAATGACACTCTTGCGAAACATTTGTTTCACTgtaagtgtcat--atttgtcgtgtggaagccttcattacagaggcaattcattttcttcgagaggtggtttgtaacctaacttttctgtgagaaatgtgttgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30299737|gb|CB976531.1|CB976531EST: TGTTGCGGAGTTCATGCCTAATGAAACTCTCTCAAAGCACCTTTTCCATT GGGAGGCACAGCCCATGAAATGGGCAATGAGGCTGAGAGTGGCTCTTTATT
genomic: TGTTGCGGAGTTCATGCCTAATGAAACTCTCTCAAAGCACCTTTTCCATTgtaaatttct ... cttggtttagGGGAGGCACAGCCCATGAAATGGGCAATGAGGCTGAGAGTGGCTCTTTATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGATTGGCAAATTTGATTGGATGTTGCTGTGAAGGGGAAGAGAGATTGCTTGTTGCGGAGTTCATGCCTAATGAAACTCTCTCAAAGCACCTTTTCCATTgtaaatttctttcaccaattctttagtagatctctctctcttcttattgtttgaatttgttgcggtaaaatgtattgcatataatgtgaatggctttttg
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtaaaa