1 5' 3' | 2 5' 3' | 3 5' 3' |
GGAGTACATTGATGAGACCTGGAAACATAATCCCATCTTGCCTACAGACCCTTATGAGAAGGCCATGGCACGGTTCTGGGCTAAGTACATGGATGACAAGgtaaacccgatactatattccctttttaaaaaaaaaaaattcatttggatcctgactactattcattatgcag
species | Vitis vinifera |
transcript | Vv06s0004g05670.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTTATGAGAAGGCCATGGCACGGTTCTGGGCTAAGTACATGGATGACAAG CTCTGGCCGGCAGCAACAAAGGTCGTGGTGAGTAAGGGAGAGGAGCAAAAGEST: gi|71871201|gb|DT020256.1|DT020256
genomic: CTTATGAGAAGGCCATGGCACGGTTCTGGGCTAAGTACATGGATGACAAGgtaaacccga ... cattatgcagCTCTGGCCGGCAGCAACAAAGGTCGTGGTGAGTAAGGGAGAGGAGCAAAAG
EST: CTTATGAGAAGGCCATGGCACGGTTCTGGGCTAAGTACATGGATGACAAG CTCTGGCCGGCAGCAACAAAGGTCGTGGTGAGTAAGGGAGAGGAGCAAA
genomic: CTTATGAGAAGGCCATGGCACGGTTCTGGGCTAAGTACATGGATGACAAGgtaaacccga ... cattatgcagCTCTGGCCGGCAGCAACAAAGGTCGTGGTGAGTAAGGGAGAGGAGCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGTACATTGATGAGACCTGGAAACATAATCCCATCTTGCCTACAGACCCTTATGAGAAGGCCATGGCACGGTTCTGGGCTAAGTACATGGATGACAAGgtaaacccgatactatattccctttttaaaaaaaaaaaattcatttggatcctgactactattcattatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA