Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGGTAGAACCATGTCATCTAAGTTCATCTCTCTACTACGGTGGGCAAGACATCTATTCAAATTCATCAAGCACCCAAACTTCTGGATCATATCCTGTTgtgagtctcaattagtttattcatgcacagaatatgacagataatcagtatgataactcgaggggattcaatattgtgactaaatgttttactgtatttttgaaaacatag

Basic information

species Vitis vinifera
transcript Vv06s0004g05650.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254917762|gb|GR903414.1|GR903414
EST:     ACATCTATTCAAATTCATCAAGCACCCAAACTTCTGGATCATATCCTGTT                         TTCAAGAAAGACGAAGATGATCCAAATGGAAACAATTCACAAGGTGCATCT
genomic: ACATCTATTCAAATTCATCAAGCACCCAAACTTCTGGATCATATCCTGTTgtgagtctca ... gaaaacatagTTCAAGAAAGACGAAGATGATCCAAATGGAAACAATTCACAAGGTGCATCT
EST: gi|27581890|gb|CB004585.1|CB004585
EST:     ACATCTATTCAAATTCATCAAGCACCCAAACTTCTGGATCATATCCTGTT                         TTCAAGAAAGACGAAGATGATCCAAATGGAAACAATTCACAAGGTGCATCT
genomic: ACATCTATTCAAATTCATCAAGCACCCAAACTTCTGGATCATATCCTGTTgtgagtctca ... gaaaacatagTTCAAGAAAGACGAAGATGATCCAAATGGAAACAATTCACAAGGTGCATCT
EST: gi|161711076|gb|FC061140.1|FC061140
EST:     ACATCTATTCAAATTCCTCAAGCACCCAAACTTCTGGATCATATCCTGTT                         TTCAAGAAAGACGAAGATGATCCAAATGGAAACAATTCACAAGGTGCATCT
genomic: ACATCTATTCAAATTCATCAAGCACCCAAACTTCTGGATCATATCCTGTTgtgagtctca ... gaaaacatagTTCAAGAAAGACGAAGATGATCCAAATGGAAACAATTCACAAGGTGCATCT
EST: gi|22010822|gb|BQ795856.1|BQ795856
EST:     ACATCTATTCAAATTCATCAAGCACCCAAACTTCTGGATCATATCCTGTT                         TTCAAGAAAGACGAAGATGATCCAAATGGAAACAATTCACAAGGTGCATCT
genomic: ACATCTATTCAAATTCATCAAGCACCCAAACTTCTGGATCATATCCTGTTgtgagtctca ... gaaaacatagTTCAAGAAAGACGAAGATGATCCAAATGGAAACAATTCACAAGGTGCATCT
EST: gi|110367570|gb|EC931509.1|EC931509
EST:     GGATCATATCCTGTT                         TTCAAGAAAGACGAAGATGATCCAAATGGAAACAATTCACAAGGTGCATCT
genomic: GGATCATATCCTGTTgtgagtctca ... gaaaacatagTTCAAGAAAGACGAAGATGATCCAAATGGAAACAATTCACAAGGTGCATCT