Sequence
atgc intronic sequence ATGC exonic sequenceTGGTTATTATGCAATAATACTAAAGATTGATGAAGAAGATTTTGGTGGTCATGGGGCCCTCCTCCAAGAGGGGCTTTTTGCTTCTATAACGCTCTTCCTGgtacttatcgccatatctcggttatttgtcgttgggaatctttcttgttatgtatggagtgagtaatgaattttttctttggtatcttcttattcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g04920.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G14780.1 (Glycine max), 5'ss of exon 3
TGGTTATTATGCAATAATACTAAAGATTGATGAAGAAGATTTTGGTGGTCATGGGGCCCTCCTCCAAGAGGGGCTTTTTGCTTCTATAACGCTCTTCCTGgtacttatcgccatatctcggttatttgtcgttgggaatctttcttgttatgtatggagtgagtaatgaattttttctttggtatcttcttattcag
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TAGTTACTATGCAGTAATACTAAAGGTTGATGAGGAAGAGTTTGGCGGTCATGGAGCCCTCCTTCAAGAGGGGCTATTTGCTTCCATAACTCTTTTCCTGgtaatttactatgttggtcattgctttgtccactctagaaaatgaggcttt-tactgttctacaatctgacttcacttttgatatctgtgcag----
upper sequence: Vv06s0004g04920.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA12G06700.1 (Glycine max), 5'ss of exon 3
TGGTTATTATGCAATAATACTAAAGATTGATGAAGAAGATTTTGGTGGTCATGGGGCCCTCCTCCAAGAGGGGCTTTTTGCTTCTATAACGCTCTTCCTGgtacttatcgccatatctcggttatttgtcgttgggaatctttcttgttatgtatggagtgagtaatgaattttttctttggtatcttcttattcag
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TAGTTACTATGCAGTAATGTTAAAGGTTGATGAGGAAGAGTTTGGCGGTCATGGAGCCCTCCTTCAAGAGGGGCTATTTGCTTCTATAACTCTTTTCCTGgtaatatgacatgttggtcattgctttgtctactgtagaaaatgaggcttt-tactgttctacaatctgacttcacttttaatatctgtgcag----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110365966|gb|EC929552.1|EC929552EST: ATGGGGCCCTCCTCCAAGAGGGGCTTTTTGCTTCTATAACGCTCTTCCTG CTTGCATGGATTCTGGTATACAGCTTGGTGCACTTCTGATTGGCTGGTGGC
genomic: ATGGGGCCCTCCTCCAAGAGGGGCTTTTTGCTTCTATAACGCTCTTCCTGgtacttatcg ... tcttattcagCTTGCATGGATTCTGGTATACAGCTTGGTGCACTTCTGATTGGCTGGTGGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGTTATTATGCAATAATACTAAAGATTGATGAAGAAGATTTTGGTGGTCATGGGGCCCTCCTCCAAGAGGGGCTTTTTGCTTCTATAACGCTCTTCCTGgtacttatcgccatatctcggttatttgtcgttgggaatctttcttgttatgtatggagtgagtaatgaattttttctttggtatcttcttattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG