Sequence
atgc intronic sequence ATGC exonic sequenceGAAAAAATGACCCAAATCATGTTTGAAACCTTCAATGCCCCTGCTATGTATGTTGCCATCCAGGCTGTTCTTTCCCTCTATGCCAGTGGACGTACAACTGgtatgcagtcaactatttctccatcgcatgattttatgttaaattaagaactagatgtaactcagggaagaatgattcataataaccaataaagctttga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g04570.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G14880.1 (Glycine max), 5'ss of exon 2
GAAAAAATGACCCAAATCATGTTTGAAACCTTCAATGCCCCTGCTATGTATGTTGCCATCCAGGCTGTTCTTTCCCTCTATGCCAGTGGACGTACAACTGgtatgcagtcaactatttctccatcgcatgattttatgttaaattaagaactagatgtaactcagggaagaatgattcataataa-ccaataaagctttga-------
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GAGAAAATGACCCAAATTATGTTTGAGACCTTCAATACCCCTGCCATGTATGTTGCCATCCAGGCTGTTCTATCCTTGTATGCCAGTGGCCGTACAACTGgt-------tagtcattacttcaagaaattattctgt-tccatctataagctacactctaaaattattaagctggttaattttaaactttcaatgctctgtggaggct
upper sequence: Vv06s0004g04570.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA12G06820.1 (Glycine max), 5'ss of exon 3
GAAAAAATGACCCAAATCATGTTTGAAACCTTCAATGCCCCTGCTATGTATGTTGCCATCCAGGCTGTTCTTTCCCTCTATGCCAGTGGACGTACAACTGgtatgcagtcaactatttctccatcgcatgattttatgttaaat-taagaactagatgtaactcagggaagaatgattcataataacca-ataaagctttga----
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GAGAAAATGACCCAAATTATGTTTGAGACCTTCAATACCCCTGCAATGTATGTTGCCATCCAGGCTGTTCTATCCTTGTATGCCAGTGGCCGCACAACTGgt---tagtca-ttacttctttcaagaaaattattctgttccatctaagctacactcttaaatt--gttaagctggttaattttaaacatgcaatgctctgtggag
upper sequence: Vv06s0004g04570.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA15G04360.1 (Glycine max), 5'ss of exon 2
GAAAAAATGACCCAAATCATGTTTGAAACCTTCAATGCCCCTGCTATGTATGTTGCCATCCAGGCTGTTCTTTCCCTCTATGCCAGTGGACGTACAACTGgtatgcagtca----actatttct--ccatcgcatgattttatgttaaattaagaactagatgtaactcagggaagaatgattcataataaccaataaagctttga
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GAGAAAATGACCCAAATTATGTTTGAGACCTTCAACACACCTGCTATGTATGTTGCCATCCAGGCTGTTCTATCACTCTATGCTAGTGGCCGTACTACTGgttagtctttcttgtactggctatgataaacaagcaatgctctgcaaggtttaattttccatcgggaatatgaccagatattgaatgtagaaaaataaaa------
upper sequence: Vv06s0004g04570.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G41060.1 (Glycine max), 5'ss of exon 2
GAAAAAATGACCCAAATCATGTTTGAAACCTTCAATGCCCCTGCTATGTATGTTGCCATCCAGGCTGTTCTTTCCCTCTATGCCAGTGGACGTACAACTGgtatg-cagtcaactatttctccatcgcatgatt--ttatgttaaattaagaactagatgtaactcaggg-aagaatgattca--taataaccaataaagctttga---------------------------------------------------------------------------
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GAGAAAATGACCCAAATTATGTTTGAGACCTTCAACACACCTGCTATGTATGTTGCCATCCAGGCTGTTTTATCTCTCTATGCTAGCGGCCGTACAACTGgttagtctttcttgtgctggctaataataaaaccagcaatgctatgcaaggtttaatttgccaatgggaatgaatatggaccagatactgaatgtgaaaactctacttctttttaatctcacttgaagtaattgtctggcttggctggttgcccttatgcttgttccattaatttgtgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110387986|gb|EC952697.1|EC952697EST: TGTTGCCATCCAGGCTGTTCTTTCCCTCTATGCCAGTGGACGTACAACTG GTATTGTTCTGGACTCTGGAGATGGTGTCAGTCACACTGTCCCCATCTATG
genomic: TGTTGCCATCCAGGCTGTTCTTTCCCTCTATGCCAGTGGACGTACAACTGgtatgcagtc ... ttcattgcagGTATTGTTCTGGACTCTGGAGATGGTGTCAGTCACACTGTCCCCATCTATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAAAAATGACCCAAATCATGTTTGAAACCTTCAATGCCCCTGCTATGTATGTTGCCATCCAGGCTGTTCTTTCCCTCTATGCCAGTGGACGTACAACTGgtatgcagtcaactatttctccatcgcatgattttatgttaaattaagaactagatgtaactcagggaagaatgattcataataaccaataaagctttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaag