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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCCGCTTATGCTTGCTGCAATGCACGGAAAGATTTCATGTGTCCAAAAGCTCCTTCAAGCAGGCGCCAATgtgtgtgaaattcccatatctttctctattttctgattttttttcagaagcgtgaataattgatgatgggaatcttgaaaaattttcag

Basic information

species Vitis vinifera
transcript Vv06s0004g04550.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g04550.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G14900.1 (Glycine max), 5'ss of exon 3
ACTCCGCTTATGCTTGCTGCAATGCACGGAAAGATTTCATGTGTCCAAAAGCTCCTTCAAGCAGGCGCCAATgtgtgtgaaattcccatatctttctctattttctgat----tttttttcagaagcgtgaataattgatgatgggaatcttgaa-aaattttcag-----------------------
|| ||||||||| | ||||||||||||||||||||  | |||||  ||||||||||| |||| || || ||||| |||| | ||    ||  |||    ||||||  ||    ||| || ||  | | |    | ||  |  |       | ||| ||||||||                         
ACACCGCTTATGTTGGCTGCAATGCACGGAAAGATCGCCTGTGTGGAAAAGCTCCTTGAAGCCGGTGCAAATgtatgtggagttt---taaatttgaaaattttcaaatggtgtttattccaataactttccgagttcttattctttcaatagaataaattttcttaaaattagtttttttttttgcag

upper sequence: Vv06s0004g04550.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA12G06850.1 (Glycine max), 5'ss of exon 3
ACTCCGCTTATGCTTGCTGCAATGCACGGAAAGATTTCATGTGTCCAAAAGCTCCTTCAAGCAGGCGCCAATgtgtgtgaaattcccatatctttctctattttctgat-tttttttcagaagcgtgaataattgatgatgggaatcttgaaaaattttcag--------------------------
|| ||||||||| | ||||||||||||||||||||  | |||||  ||||||||||| |||| || || ||||| |||| | ||   |  |       | |    |||| ||| || ||  | | |    |  |  |  |       | ||| || |||                             
ACACCGCTTATGTTGGCTGCAATGCACGGAAAGATCGCCTGTGTGGAAAAGCTCCTTGAAGCTGGTGCTAATgtatgtggagttttgagtttgaaaattttcaaatgatgtttattccaataacttcccgagctcttattctttcaatagaataacttttcttaaaattaatttaattttttttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71856591|gb|DT005646.1|DT005646
EST:     TGCACGGAAAGATTTCATGTGTCCAAAAGCTCCTTCAAGCAGGCGCCAAT                         GTTTTGATGTTTGATTCGATGCATGGTAGAACCTGCTTGCACTACGCCGCC
genomic: TGCACGGAAAGATTTCATGTGTCCAAAAGCTCCTTCAAGCAGGCGCCAATgtgtgtgaaa ... aaattttcagGTTTTGATGTTTGATTCGATGCATGGTAGAACCTGCTTGCACTACGCGGCC
EST: gi|110686614|gb|EE064454.1|EE064454
EST:     TGCACGGAAAGATTTCATGTGTCCAAAAGCTCCTTCAAGCAGGCGCCAAT                         GTTTTGATGTTTGATTCGATGCATGGTAGAACCTGCTTGCACTACGCGGCC
genomic: TGCACGGAAAGATTTCATGTGTCCAAAAGCTCCTTCAAGCAGGCGCCAATgtgtgtgaaa ... aaattttcagGTTTTGATGTTTGATTCGATGCATGGTAGAACCTGCTTGCACTACGCGGCC
EST: gi|22013975|gb|BQ799009.1|BQ799009
EST:     TGCACGGAAAGATTTCATGTGTCCAAAAGCTCCTTCAAGCAGGCGCCAAT                         GTTTTGATGTTTGATTCGATGCATGGTAGAACCTGCTTGCACTACGCGGCC
genomic: TGCACGGAAAGATTTCATGTGTCCAAAAGCTCCTTCAAGCAGGCGCCAATgtgtgtgaaa ... aaattttcagGTTTTGATGTTTGATTCGATGCATGGTAGAACCTGCTTGCACTACGCGGCC
EST: gi|110712240|gb|EE089633.1|EE089633
EST:     TGCACGGAAAGATTTCATGTGTCCAAAAGCTCCTTCAAGCAGGCGCCAAT                         GTTTTGATGTTTGATTCGATGCATGGTAGAACCTGCTTGCACTACGCGGCC
genomic: TGCACGGAAAGATTTCATGTGTCCAAAAGCTCCTTCAAGCAGGCGCCAATgtgtgtgaaa ... aaattttcagGTTTTGATGTTTGATTCGATGCATGGTAGAACCTGCTTGCACTACGCGGCC
EST: gi|110699327|gb|EE076228.1|EE076228
EST:     TGCACGGAACGATTTCATGTGTCCAAAAGCTCCTTCAAGCAGGCGCCAAT                         GTTTTGATGTTTGATTCGATGCATGGTAGAACCTGCTTGCACTACGCGGCC
genomic: TGCACGGAAAGATTTCATGTGTCCAAAAGCTCCTTCAAGCAGGCGCCAATgtgtgtgaaa ... aaattttcagGTTTTGATGTTTGATTCGATGCATGGTAGAACCTGCTTGCACTACGCGGCC
EST: gi|71856782|gb|DT005837.1|DT005837
EST:     TGCACGGAAAGATTTCATGTGTCCAAAAGCTCCTTCAAGCAGGCGCCAAT                         GTTTTGATGTTTGATTCGATGCATGGTAGAACCTGCTTGCACTACGCCGCC
genomic: TGCACGGAAAGATTTCATGTGTCCAAAAGCTCCTTCAAGCAGGCGCCAATgtgtgtgaaa ... aaattttcagGTTTTGATGTTTGATTCGATGCATGGTAGAACCTGCTTGCACTACGCGGCC
EST: gi|71857386|gb|DT006441.1|DT006441
EST:     TGCACGGAAAGATTTCATGTGCCCAAAAGCTCCTTCAAGCAGGCGCCAAT                         GTTTTGATGTTTGATTCGATGCATGGTAGAACCTGCTTGCACTACGCGGCC
genomic: TGCACGGAAAGATTTCATGTGTCCAAAAGCTCCTTCAAGCAGGCGCCAATgtgtgtgaaa ... aaattttcagGTTTTGATGTTTGATTCGATGCATGGTAGAACCTGCTTGCACTACGCGGCC