Sequence
atgc intronic sequence ATGC exonic sequenceTTCTGTTGATGACAATGCTGATGGTACTGATTCTGGGAAAGAGTGTGTCATCTGCTTGTCAGAACCAAGAGACACAACTGTCCTCCCTTGCAGACACATGgtatataataattctatttcttcctttattttctccctgtctgctaatttttttttctcttctgtgttgactggaaaaggagtcaataggcagtcattcc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g02970.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os10g13670.1 (Oryza sativa), 5'ss of exon 2
TTCTGTTGATGACAATGCTGATGGTACTGATTCTGGGAAAGAGTGTGTCATCTGCTTGTCAGAACCAAGAGACACAACTGTCCTCCCTTGCAGACACATGgta-----tataata--------attctatttcttcctttattttctccctgtctgctaattttttttt----ctcttctgtgt-tgactggaaaaggag-tcaataggcagtcattcc---------------------------------------------------
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CTCTGTTGAAGGTGACACCGAAGGGAATGATCCTGGCAAAGAGTGTGTTATCTGCCTATCGGAGCCAAGGGATACAACTGTCCTCCCATGTAGACATATGgtaagtcttgaaacaggctcttgagtttatgtttgtcctttattttactttatgctgaaattatgtcctacaactcttctgttcatgttttacatagtagatgcctagatcgtcatcgtcgtgaaattttcggaatgacaaacccttttgacattttccttatggtgcag
upper sequence: Vv06s0004g02970.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G03200.1 (Arabidopsis thaliana), 5'ss of exon 2
TTCTGTTGATGACAATGCTGATGGTACTGATTCTGGGAAAGAGTGTGTCATCTGCTTGTCAGAACCAAGAGACACAACTGTCCTCCCTTGCAGACACATGgtatataataattctatttcttcctttattttctccctgtctgctaatttttttttctcttctgtgttgactggaaaaggagtcaataggcagtcattcc
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TGGGATTGAGAACACGGTTGATGGTTCCGATGAGGGAAAGGAATGTGTTGTATGCTTGTCTGAACCACGCGATACAACTGTTCTTCCTTGCAGACACATGgtata-----gtgttcatcatacttaaaattagctcatataaaaaaaaaattgaacttcttttgaaatggtttgtgtatttct-gtttggcag-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|45771171|gb|CN007023.1|CN007023EST: TCTGCTTGTCAGAACCAAGAGACACAACTGTCCTCCCTTGCAGACACATG TGTATGTGTGGTGGGTGTGCCAAGGTTTTGAGGTTCCAGATGAACCGATGC
genomic: TCTGCTTGTCAGAACCAAGAGACACAACTGTCCTCCCTTGCAGACACATGgtatataata ... attggtgcagTGTATGTGTGGTGGGTGTGCCAAGGTTTTGAGGTTCCAGATGAACCGATGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCTGTTGATGACAATGCTGATGGTACTGATTCTGGGAAAGAGTGTGTCATCTGCTTGTCAGAACCAAGAGACACAACTGTCCTCCCTTGCAGACACATGgtatataataattctatttcttcctttattttctccctgtctgctaatttttttttctcttctgtgttgactggaaaaggagtcaataggcagtcattcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggaaaa