Sequence
atgc intronic sequence ATGC exonic sequenceATATGGAGATGAGCACAAGCTCGCAGGATTCTCAGCAACATTGCAAGCTATCATTTCGTTTGTGGAGAATGGgtatattgctatgatttacctatttgattttaatttatattatatgattaagttttatttgcaagtatatgcttattggtggattaatttttcattgaagaaaaacttaaaaaaaactttcaacagtttcctttattaatctcttttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g02820.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA12G29450.3 (Glycine max), 5'ss of exon 3
ATATGGAGATGAGCACAAGCTCGCAGGATTCTCAGCAACATTGCAAGCTATCATTTCGTTTGTGGAGAATGGgtat-attgctatgatttacctatttgattttaatttatattatatgattaagttttatttgcaagtatatgcttattggtggattaatttttcattgaagaaaaacttaaaaaaaactttcaacagtttcctttattaatctcttttcag
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GTATGGAGACGAACACAAGCTTGCTGGTTTTTCAGCAACTTTGCAAGCAATCATTTCCTTTGTGGAGAATGGgtattgtagctgtctttgttctggttaattatagcctg-attgt---------ttctaattacagccatattcctaattacat-ttgggtctttatctgactataatttgagtaaattttataatggctatcttt-----tatgttttcag
upper sequence: Vv06s0004g02820.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G40080.2 (Glycine max), 5'ss of exon 4
ATATGGAGATGAGCACAAGCTCGCAGGATTCTCAGCAACATTGCAAGCTATCATTTCGTTTGTGGAGAATGGgtatattgctatgatttacctatttgattttaatttatattatatgattaagttttatttgcaagtatatgcttattggtggattaatttttcattgaagaaaaacttaaaaaaaactttcaacagtttcctttattaatctcttttcag
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GTATGGAGACGAACACAAGCTTGCTGGTTTTTCAGCAACTTTGCAAGCAATCATTTCCTTTGTGGAGAATGGgtat--tgtagctgtcttccttctgg---ttaatt---atagcctgat-agtttctaactacagcaatattcctaattgcat-ttgattctttatctgactataatttgagtaaattttaaaatggttatcttt-----tatgttttcag
upper sequence: Vv06s0004g02820.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT2G28390.1 (Arabidopsis thaliana), 5'ss of exon 3
ATATGGAGATGAGCACAAGCTCGCAGGATTCTCAGCAACATTGCAAGCTATCATTTCGTTTGTGGAGAATGGgtatattgctatgatttacctatttgattttaatttatattatatgattaagttttatttgcaagtatatgcttattggtggattaatttttcattgaagaaaaacttaaaaaaaactttcaacagtttcctttattaatctcttttcag
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ATATGGAGATGAACATAAGCTTGCTGGATTTTCAGCTACTCTTCAAGCTATTATTTCTTTTGTGGAGAATGGgtaaaata-tgcactagctttgtcttatgtttgtttcctttat--ggttactttttgtatttaa-----cgtttgatgcctaacccatttttttttag----------------------------------------------------
upper sequence: Vv06s0004g02820.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S55_143V6.1 (Physcomitrella patens), 5'ss of exon 5
ATATGGAGATGAGCACAAGCTCGCAGGATTCTCAGCAACATTGCAAGCTATCATTTCGTTTGTGGAGAATGGgtatattgctatgatttacctatttgattttaatttatattatatgattaagttttatttgcaagtatatgcttattggtg-gattaatttttcattgaa---gaaaaacttaaaaaaaactttcaacagtttcct-----ttattaatctcttttcag---------------------------------------
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ATACGGGGATGAGCACAAGCTTGCAGGTTTCTCAGCGACATTGCAAGCTATCATGTCTTTTGTTGAAAACAGgtat----cacaaagtcgcatccgggagcaaaaccaaatggatagttcctatcatttttggcattggcattgtagttggcgtgctttatccatcatctgacctggtcagcatataatgaattaagaagcagatcctgattatgattatggttgttttaacttggtgtctgttggaaacatgcaacttggatgctgaag
upper sequence: Vv06s0004g02820.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S452_21V6.1 (Physcomitrella patens), 5'ss of exon 5
ATATGGAGATGAGCACAAGCTCGCAGGATTCTCAGCAACATTGCAAGCTATCATTTCGTTTGTGGAGAATGGgtatattgctatgatttacctatttgattttaatttatattatatgattaagttttatttgcaagtatatgcttattggtgg-attaatttttcattgaagaaaaacttaaaaaaaactttcaacagtttcctttattaatctcttttcag
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ATATGGGGATGAGCACAAACTCGCAGGTTTCTCAGCGACATTACAAGCTATCATGTCTTTTGTTGAAAATAGgtat----cagtgaatcgcattctgga---------gcagtgagtaaatggatagttcctgggggt-catgtttaacatcggcattagagttcgcttcatcatctgtatatcgc-------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110699831|gb|EE077188.1|EE077188EST: GCAGGATTCTCAGCAACATTGCAAGCTATCATTTCGTTTGTGGAGAATGG GGGAGATCGTGTCCAATTAATAAGGGCAGGAAAACACCAG
genomic: GCAGGATTCTCAGCAACATTGCAAGCTATCATTTCGTTTGTGGAGAATGGgtatattgct ... ctcttttcagGGGAGATCGTGTCCAATTAATAAGGGCAGGAAAACACCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATATGGAGATGAGCACAAGCTCGCAGGATTCTCAGCAACATTGCAAGCTATCATTTCGTTTGTGGAGAATGGgtatattgctatgatttacctatttgattttaatttatattatatgattaagttttatttgcaagtatatgcttattggtggattaatttttcattgaagaaaaacttaaaaaaaactttcaacagtttcctttattaatctcttttcag
- - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA