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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAATCACATGACAGTGCCAGGCTTATTATCACAACTATTATGGGAGTTGTCTTTGGATATTTTGTTGGTGTTTCATTTCCATCTGCTTCTCTCACCAAGgtatgtagacctatctttattgtatgcatatgctgcactctgcacctatcatcaatttgattcatggttaaatcttgcag

Basic information

species Vitis vinifera
transcript Vv06s0004g02700.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g02700.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G39990.1 (Glycine max), 5'ss of exon 3
AAAATCACATGACAGTGCCAGGCTTATTATCACAACTATTATGGGAGTTGTCTTTGGATATTTTGTTGGTGTTTCATTTCCATCTGCTTCTCTCACCAAGgtatgtagacctatctttattgtatgcatatgctgcactctgcacctatcatcaatttgatt----catggttaaatcttgcag
|| |||| |||| ||| || || |||| |||||| ||||||||||| ||| |||||||| |||||||||| ||||| || ||||||    | | || ||||||       | |   | ||| | | || ||| |            | |||||  | | |||    | | |||| || ||||||
AAGATCAAATGATAGTACCCGGATTATCATCACAGCTATTATGGGAATTGCCTTTGGATTTTTTGTTGGTATTTCAATTTCATCTGTGCATTTGACTAAGgtaatatttacaacggtaattcttttca-atgttttgtcacatgtttttcatccttataatttttcccttgttatattttgcag

upper sequence: Vv06s0004g02700.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA12G29800.1 (Glycine max), 5'ss of exon 3
AAAATCACATGACAGTGCCAGGCTTATTATCACAACTATTATGGGAGTTGTCTTTGGATATTTTGTTGGTGTTTCATTTCCATCTGCTTCTCTCACCAAGgtatgtagacctatctttattgtatgcatatgctgcactctgcacctatcatc-----aatttgattcatggttaaatcttgcag-------------------------
|| |||| |||| ||| || || |||| |||||| ||||||||||| ||| |||||||| |||| ||||| ||||| || ||||||    | | || ||||||       | ||  | ||| | | || |||||        |   | |||||     |||||  | | | |||| || ||||||                         
AAGATCAAATGATAGTACCCGGATTATCATCACAGCTATTATGGGAATTGCCTTTGGATTTTTTATTGGTATTTCAATTTCATCTGTGCATTTGACTAAGgtaatatttacaatggtaattcttttca-atgctttgtcacacgtttttcatccttataattttttcccttgttatattttgcagattagcttactttcttcatctgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161717256|gb|FC067262.1|FC067262
EST:     TCTTTGGATATTTTGTTGGTGTTTCATTTCCATCTGCTTCTCTCACCAAG                         ATTAACTTATCTTCAAGCCTTATGTCCTCTCTTGATGTAGCCACCTCTGAG
genomic: TCTTTGGATATTTTGTTGGTGTTTCATTTCCATCTGCTTCTCTCACCAAGgtatgtagac ... aatcttgcagATTAACTTATCTTCAAGCCTTATGTCCTCTCTTGATGTAGCCACCTCTGAG
EST: gi|110687082|gb|EE064179.1|EE064179
EST:     TCTTTGGATATTTTGTTGGTGTTTCATTTCCATCTGCTTCTCTCACCAAG                         ATTAACTTATCTTCAAGCCTTATGTCCTCTCTTGATGTAGCCACCTCTGAG
genomic: TCTTTGGATATTTTGTTGGTGTTTCATTTCCATCTGCTTCTCTCACCAAGgtatgtagac ... aatcttgcagATTAACTTATCTTCAAGCCTTATGTCCTCTCTTGATGTAGCCACCTCTGAG