Sequence
atgc intronic sequence ATGC exonic sequenceAAATGTGATAACGATGTACAGTCTTGAAAGACACTGGTTGTCTCTTAATGAAGAAACTGGTGGCATGAATGATGTTCTTTACAGATTATACAGCATAACGgtatgcaattcatgtctgatatcgttctagtaattaaattgtaaatgatcaggtgttgatttactaaatccctgtagcatatggttatatctgccaaattttattgatttttgggttttgcatgagcttcttttgtgtcactatgtgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g01770.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G14020.1 (Glycine max), 5'ss of exon 3
AAATGTGATAACGATGTACAGTCTTGAAAGACACTGGTTGTCTCTTAATGAAGAAACTGGTGGCATGAATGATGTTCTTTACAGATTATACAGCATAACGgtatgcaattcatgtctgatatcgttctagtaattaaattgtaaatgatcaggtgttgatttactaaatccctgtagcatatggttatatctgccaaattttattgatttttgggttttgcatgagcttcttttgtgtcactatgtgcag
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GAATGTAATAACAAAGTACACTGTAAATAGGCATTATGAATCACTGAATGAGGAAACTGGAGGGATGAATGATGTCCTTTACAGATTATACAGCATAACGgtaagttaacta-gtttg-tgtaatttc-----ttttactcttattgctt---tgtttgcttgtatgatgttcttgaattgtagacttgtttatttaagcataatggtta----------------------------------------
upper sequence: Vv06s0004g01770.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA12G05980.1 (Glycine max), 5'ss of exon 3
AAATGTGATAACGATGTACAGTCTTGAAAGACACTGGTTGTCTCTTAATGAAGAAACTGGTGGCATGAATGATGTTCTTTACAGATTATACAGCATAACGgtatgc-aattcatgtctgatatcgttcta-gtaattaaattgtaaatgatcaggtgttgattta---ctaaatccctgtagcatatggttatatctgccaaattttattgatttttgggttttgcatgagcttcttttgtgtcactatgtgcag--------------------------------------------
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GAATGTAATAACAAAGTACACTGTAAATAGACACTATCAATCAATGAATGAAGAAACTGGAGGAATGAATGATGTCCTTTATAGATTATACAGCATAACGgtaagttaactggtttgtttttctgtatgatattcttgaattgtagacttttt--tttttatttaagcataagggttaacagaaatggattacaatccataggtgagatattttacaagaattggcttaccagtaatagttttcattat-tatagcacacttcactttggaattaaagttgtcatgtttttctattcag
upper sequence: Vv06s0004g01770.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA15G03770.1 (Glycine max), 5'ss of exon 3
AAATGTGATAACGATGTACAGTCTTGAAAGACACTGGTTGTCTCTTAATGAAGAAACTGGTGGCATGAATGATGTTCTTTACAGATTATACAGCATAACGgtatgcaattcatgtctgatatcgttctagtaattaaattgtaaatgatcaggtgttgatttactaaatccctgtagcatatg-gttatatctgccaaattttattgatttttgggttttgcatgagcttcttttgtgtcactatgtgcag
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GAATGTTATAACAAAGTTTAGTATAAGTAGACACTATCAATCACTGAATGAGGAAACTGGAGGCATGAATGATGTCCTTTACAAACTATACAGCATAACGgtacgttaatta--------atagttgtaattagtccatt-tagtttctttaactctacttttatagactccta-ggcgtatttgttgtaactatggtatta-acagaaaa----------------------------------------
upper sequence: Vv06s0004g01770.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G12960.1 (Arabidopsis thaliana), 5'ss of exon 3
AAATGTGATAACGATGTACAGTCTTGAAAGACACTGGTTGTCTCTTAATGAAGAAACTGGTGGCATGAATGATGTTCTTTACAGATTATACAGCATAACGgtatgcaattcatgtctgatatcgttctagtaattaaattgtaaatgatcaggtgttgatttactaaatccctgtagcatatggttatatctgccaaattttattgatttttgggttttgcatgagcttcttttgtgtcactatgtgcag
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AAATGTGATAAAGAAGTACAGTGTTGAACGACATTGGCTATCACTAAACGAAGAGACTGGTGGCATGAATGATGTTCTTTATCAGCTATACAGCATCACTgtg---agttaaaatct--tatcagact-----ctaaactccaacc--ttagatttctatctag-----ctttgtgttatatcatagtgttt--tggactctgcag--------------------------------------------
upper sequence: Vv06s0004g01770.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G12950.1 (Arabidopsis thaliana), 5'ss of exon 3
AAATGTGATAACGATGTACAGTCTTGAAAGACACTGGTTGTCTCTTAATGAAGAAACTGGTGGCATGAATGATGTTCTTTACAGATTATACAGCATAACGgtatgcaattcatgtctgatatcgttctagtaattaaattgtaaatgatcaggtgttgatttactaaatccctgtagcatatggttatatctgccaaattttattgatttttgggttttgcatgagcttcttttgtgtcactatgtgcag
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TAATGTGATAAGGAAGTACAGTGTTGAACGACATTGGCAATCACTAAACGAAGAGACTGGTGGCATGAATGATGTTCTTTATCAGCTATACAGCATCACTgtggg---ttaaaatctaatcagactcaaaaaggcaacct-tagatttcta--tgtagctctgtgtcattttt-tagtttattg--gactctgcag------------------------------------------------------
upper sequence: Vv06s0004g01770.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ30467 (Selaginella moellendorffii), 5'ss of exon 3
AAATGTGATAACGATGTACAGTCTTGAAAGACACTGGTTGTCTCTTAATGAAGAAACTGGTGGCATGAATGATGTTCTTTACAGATTATACAGCATAACGgtatgcaattcatgtctgatatcgttctagtaattaaattgtaaatgatcaggtgttgatttactaaatccctgtagcatatggttatatctgccaaattttattgatttttgggttttgcatgagcttcttttgtgtcactatgtgcag
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AAACTACATCGAGAAGTACAGCATTCAAGCTCACTTCCAAGCGCTAAATGAAGAAACTGGTGGCATGAATGATGTTCTCTATGACCTCTATAAGATCACGgtacgttgttttaagttggcatgatc---gttaccagatttcttacaat---gctttgtcttgct---tcgcag----------------------------------------------------------------------------
upper sequence: Vv06s0004g01770.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ23069 (Selaginella moellendorffii), 5'ss of exon 3
AAATGTGATAACGATGTACAGTCTTGAAAGACACTGGTTGTCTCTTAATGAAGAAACTGGTGGCATGAATGATGTTCTTTACAGATTATACAGCATAACGgtatgcaattcatgtctgatatcgttctagtaattaaattgtaaatgatcaggtgttgatttactaaatccctgtagcatatggttatatctgccaaattttattgatttttgggttttgcatgagcttcttttgtgtcactatgtgcag
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AAACTACATCGAGAAGTACAGCATTCAAGCTCACTTCCAAGCGCTAAATGAAGAAACTGGTGGCATGAATGATGTTCTCTATGACCTCTATAAGATCACGgtaccttgttttaagttggcatggtc---gttaccagatttcttacaat---gcttcgtcttgcc---tcgcag----------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161721828|gb|FC070507.1|FC070507EST: AAGAAACTGGTGGCATGAATGATGTTCTTTACAGATTATACAGCATAACG GGAGATCAGAAACATTTGGTGTTGGCTCACCTTTTTGACAAACCATGCTTC
genomic: AAGAAACTGGTGGCATGAATGATGTTCTTTACAGATTATACAGCATAACGgtatgcaatt ... ctatgtgcagGGAGATCAGAAACATTTGGTGTTGGCTCACCTTTTTGACAAACCGTGCTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAATGTGATAACGATGTACAGTCTTGAAAGACACTGGTTGTCTCTTAATGAAGAAACTGGTGGCATGAATGATGTTCTTTACAGATTATACAGCATAACGgtatgcaattcatgtctgatatcgttctagtaattaaattgtaaatgatcaggtgttgatttactaaatccctgtagcatatggttatatctgccaaattttattgatttttgggttttgcatgagcttcttttgtgtcactatgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG