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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAAGATATCTCAACTGAGCCGCATGTAGAACGTGAACTGATGCTCATAAAAGTCAATGCGAATCCCCAGTATCGTGCTGAGgtaatcacaatttgatgctgggacattgaacattgaaggtcttcgttgattttttttttaatctgcacttgcttcttgcgatgttcattatcttattactgaattccatttctttgttttaacctccag

Basic information

species Vitis vinifera
transcript Vv05s0094g01110.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0094g01110.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT2G31810.3 (Arabidopsis thaliana), 5'ss of exon 3
GTTGAAGATATCTCAACTGAGCCGCATGTAGAACGTGAACTGATGCTCATAAAAGTCAATGCGAATCCCCAGTATCGTGCTGAGgtaatcacaatttgatgctgggacattgaacattgaaggtcttcgttgattttttttttaatctgcacttgcttcttgcgatgttcattatcttatt--actgaattccatttctttgtt--ttaacctccag
|||||||||||||||| ||||||||| || || ||||| ||||||||  ||||||| |||||  ||||  | |   | || |||||| | |    |||    ||||| |||  |  || |  ||  | | || ||  || |   || |      |      | | ||||  || |||   |  | |  |||    |||| | ||  | ||    |||
GTTGAAGATATCTCAAGTGAGCCGCAAGTGGAGCGTGAGCTGATGCTTGTAAAAGTGAATGCACATCCAGAATCCAGGGCAGAGgtact-attccttgcctatgggaaattaga-gtttactgtacttgctggttgcttct--gatttagggcagag----gtggtgttagttttctctctaaatttgattaagcttctgttttaatgaattcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30326336|gb|CD009598.1|CD009598
EST:     GTGAACTGATGCTCATAAAAGTCAATGCGAATCCCCAGTATCGTGCTGAG                         ATCATGTGGTTAGTGAACATTTTCAGAGCGNAAATTGTGGATATCTCAGAG
genomic: GTGAACTGATGCTCATAAAAGTCAATGCGAATCCCCAGTATCGTGCTGAGgtaatcacaa ... taacctccagATCATGTGGTTAGTGAACATTTTCAGAGCGAAAATTGTGGATATCTCAGAG
EST: gi|294964421|gb|GW838224.1|GW838224
EST:     GTGAACTGATGCTCATAAAAGTCAATGCGAATCCCCAGTATCGTGCTGAG                         ATCATGTGGTTAGTGAACATTTACAGAGCGAAAATTGTGGATAT-TCAGAG
genomic: GTGAACTGATGCTCATAAAAGTCAATGCGAATCCCCAGTATCGTGCTGAGgtaatcacaa ... taacctccagATCATGTGGTTAGTGAACATTTTCAGAGCGAAAATTGTGGATATCTCAGAG
EST: gi|37185402|gb|CF604755.1|CF604755
EST:     GTGAACTGATGCTCATAAAAGTCAATGCGAATCCCCAGTATCGTGCTGAG                         ATCATGTGGTTAGTGAACATTTTCAGAGCGAAAATTGTGGATATCTCAGAG
genomic: GTGAACTGATGCTCATAAAAGTCAATGCGAATCCCCAGTATCGTGCTGAGgtaatcacaa ... taacctccagATCATGTGGTTAGTGAACATTTTCAGAGCGAAAATTGTGGATATCTCAGAG
EST: gi|32247510|gb|CD713329.1|CD713329
EST:     GTGAACTGATGCTCATAAAAGTCAATGCGAATCCCCAGTATCGTGCTGAG                         ATCATGTGGTTAGTGAACATTTTCAGAGCGAAA-TTGTGGATATCTCAGAG
genomic: GTGAACTGATGCTCATAAAAGTCAATGCGAATCCCCAGTATCGTGCTGAGgtaatcacaa ... taacctccagATCATGTGGTTAGTGAACATTTTCAGAGCGAAAATTGTGGATATCTCAGAG
EST: gi|352772784|gb|FQ473822.1|FQ473822
EST:     GTGAACTGATGCTCATAAAAGTCAATGCGAATCCCCAGTATCGTGCTGAG                         ATCATGTGGTTAGTGAACATTTTCAGAGCGAAAATTGTGGATATCTCAGAG
genomic: GTGAACTGATGCTCATAAAAGTCAATGCGAATCCCCAGTATCGTGCTGAGgtaatcacaa ... taacctccagATCATGTGGTTAGTGAACATTTTCAGAGCGAAAATTGTGGATATCTCAGAG
EST: gi|110708435|gb|EE085972.1|EE085972
EST:     GTGAACTCATGCTCATAAAAGTCAATGCGAATCCCCAGTATCGTGCTGAG                         ATCATGTGGTTAGTGAACATTTTCAGAGCGAAAATTGTGGATATCTCAGAG
genomic: GTGAACTGATGCTCATAAAAGTCAATGCGAATCCCCAGTATCGTGCTGAGgtaatcacaa ... taacctccagATCATGTGGTTAGTGAACATTTTCAGAGCGAAAATTGTGGATATCTCAGAG
EST: gi|110723613|gb|EE101123.1|EE101123
EST:     GTGAACTGATGCTCATAAAAGTCAATGCGAATCCCCAGTATCGTGCTGAG                         ATCATGTGGTTAGTGAACATTTTCAGAGCGAAAATTGTGGATATCTCAGAG
genomic: GTGAACTGATGCTCATAAAAGTCAATGCGAATCCCCAGTATCGTGCTGAGgtaatcacaa ... taacctccagATCATGTGGTTAGTGAACATTTTCAGAGCGAAAATTGTGGATATCTCAGAG