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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACCATGCCAATAACCTTGCTTCTAAAATTCGTAATAATTTGACTAATTCAATGAAAGCATTGGGTGTGGACATATTAACAGGCGTTGGAACAATTTTGgtaagttgtccatgctgacaaagacaagatctttcaagcaattcaaattaaagcctggtttatgacagttttgaacttcatggaaaaatggatggtttacttgagcctgtcctatgctttaataaccaatctcatggttacaaaagtcctaatgatatttattatcaataatttcatttatgaatttattcag

Basic information

species Vitis vinifera
transcript Vv05s0077g01210.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0077g01210.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os01g23610.1 (Oryza sativa), 5'ss of exon 3
TGACCATGCCAATAACCTTGCTTCTAAAATTCGTAATAATTTGACTAATTCAATGAAAGCATTGGGTGTGGACATATTAACAGGCGTTGGAACAATTTTGgtaagttgtccatgctgacaaagacaagatctttcaagcaattcaaattaaagcctggtttatgacagttttgaacttcatggaaaaatggatggtttacttgagcctgtcctatgctttaataaccaatctcatggttacaaaagtcctaatgatatttattatcaataatttcatttatgaatttattcag
 || ||||| ||||| || || |||||||||||||  || ||||||||||| |||||||| ||||||||||| ||||| || ||  |||| || ||| ||||| ||  || ||     |           |||    |  ||  ||    |    |  ||  |    || ||| |  |  || || | ||     || || | |   | |  |                                                                                
AGATCATGCAAATAATCTGGCCTCTAAAATTCGTAGCAACTTGACTAATTCGATGAAAGCTTTGGGTGTGGATATATTGACTGGTTTTGGCACCATTGTGgtaggtcatctatatctcc-----------cttgtttgtcatgaaagcagacaatttattattatgggtgttgcatatgttgcaagagtgagca-ttgacat-attttatttt--------------------------------------------------------------------------------

upper sequence: Vv05s0077g01210.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G145595_T02 (Zea mays), 5'ss of exon 3
TGACCATGCCAATAACCTTGCTTCTAAAATTCGTAATAATTTGACTAATTCAATGAAAGCATTGGGTGTGGACATATTAACAGGCGTTGGAACAATTTTGgtaagttgtccatgctgacaaagacaagatctttcaagcaattcaaattaaagcctggtttatgacagttttgaacttcatggaaaaatggatggtttacttgagcctgtcctatgctttaataaccaatctcatggttacaaaagtcctaatgatatttattatcaataatttcatttatgaatttattcag
||||||||| ||||| ||||| |||||||| || |  || ||||||||||||||||||||  |||||||||| ||| | || ||  |||| || ||| ||||  ||   | |                |||||||  |   ||    | |||  |   | | |     ||   ||  |||||      | | | |    | | | | |||||   | | ||| |                                                                     
TGACCATGCAAATAATCTTGCATCTAAAATCCGCAGCAACTTGACTAATTCAATGAAAGCTCTGGGTGTGGATATACTCACTGGTATTGGCACCATTGTGgtgggtcacctac---------------atctttcctgtgtttgtcttaaaaatcaaatattttgttatta-aaatgtcatg------ttggttgcaagcatcatcttgtcca--ggtataaga---------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349826900|gb|FQ418991.1|FQ418991
EST:     CAATGAAAGCATTGGGTGTGGACATATTAACAGGCGTTGGAACAATTTTG                         GGCCCTCAAAAGGTGAAATATGGAAAGGTTGGCTTCTCTGAGAATGTAATA
genomic: CAATGAAAGCATTGGGTGTGGACATATTAACAGGCGTTGGAACAATTTTGgtaagttgtc ... atttattcagGGCCCTCAAAAGGTGAAATATGGAAAGGTTGGCTTCTCTGAGAATGTAATA
EST: gi|351031178|gb|FQ445005.1|FQ445005
EST:     CAATGAAGGCATTGGGTGTGGACATATTAACAGGCGTTGGAACAATTTTG                         GGCCCTCAAAAGGTGAAATATGGAAAGGTTGGCTTCTCTGAGAATGTAATA
genomic: CAATGAAAGCATTGGGTGTGGACATATTAACAGGCGTTGGAACAATTTTGgtaagttgtc ... atttattcagGGCCCTCAAAAGGTGAAATATGGAAAGGTTGGCTTCTCTGAGAATGTAATA
EST: gi|71877655|gb|DT026710.1|DT026710
EST:     CAATGAAAGCATTGGGTGTGGACATATTAACAGGCGTTGGAACAATTTTG                         GGCCCTCAAAAGGTGAAATATGGAAAGGTTGGCTTCTCTGAGAATGTAATA
genomic: CAATGAAAGCATTGGGTGTGGACATATTAACAGGCGTTGGAACAATTTTGgtaagttgtc ... atttattcagGGCCCTCAAAAGGTGAAATATGGAAAGGTTGGCTTCTCTGAGAATGTAATA
EST: gi|71877913|gb|DT026968.1|DT026968
EST:     CAATGAAAGCATTGGGTGTGGACATATTAACAGGCGTTGGAACAATTTTG                         GGCCCTCAAAAGGTGAAATATGGAAAGGTTGGCTTCTCTGAGAATGTAATA
genomic: CAATGAAAGCATTGGGTGTGGACATATTAACAGGCGTTGGAACAATTTTGgtaagttgtc ... atttattcagGGCCCTCAAAAGGTGAAATATGGAAAGGTTGGCTTCTCTGAGAATGTAATA
EST: gi|351022014|gb|FQ437801.1|FQ437801
EST:     CAATGAAAGCATTGGGTGTGGACATATTAACAGGCGTTGGAACAATTTTG                         GGCCCTCAAAAGGTGAAATATGGAAAGGTTGGCTTCTCTGAGAATGTAATA
genomic: CAATGAAAGCATTGGGTGTGGACATATTAACAGGCGTTGGAACAATTTTGgtaagttgtc ... atttattcagGGCCCTCAAAAGGTGAAATATGGAAAGGTTGGCTTCTCTGAGAATGTAATA
EST: gi|351014262|gb|FQ434851.1|FQ434851
EST:     CAATGAAAGCATTGGGTGTGGACATATTAACAGGCGTTGGAACAATTTTG                         GGCCCTCAAAAGGTGAAATATGGAAAGGTTGGCTTCTCTGAGAATGTAATA
genomic: CAATGAAAGCATTGGGTGTGGACATATTAACAGGCGTTGGAACAATTTTGgtaagttgtc ... atttattcagGGCCCTCAAAAGGTGAAATATGGAAAGGTTGGCTTCTCTGAGAATGTAATA
EST: gi|351023248|gb|FQ432631.1|FQ432631
EST:     CAATGAAAGCATTGGGTGTGGACATATTAACAGGCGTTGGAACAATTTTG                         GGCCCTCAAAAGGTGAAATATGGAAAGGTTGGCTTCTCTGAGAATGTAATA
genomic: CAATGAAAGCATTGGGTGTGGACATATTAACAGGCGTTGGAACAATTTTGgtaagttgtc ... atttattcagGGCCCTCAAAAGGTGAAATATGGAAAGGTTGGCTTCTCTGAGAATGTAATA
EST: gi|71878131|gb|DT027186.1|DT027186
EST:     CAATGAAAGCATTGGGTGTGGACATATTAACAGGCGTTGGAACAATTTTG                         GGCCCTCAAAAGGTGAAATATGGAAAGGTTGGCTTCTCTGAGAATGTAATA
genomic: CAATGAAAGCATTGGGTGTGGACATATTAACAGGCGTTGGAACAATTTTGgtaagttgtc ... atttattcagGGCCCTCAAAAGGTGAAATATGGAAAGGTTGGCTTCTCTGAGAATGTAATA