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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGATCTATGGAAGGCAAATATGAGGCATCCACAGGCATCTGAGTTTGTCAACAAGGATATAATTTCCCACTTTGTTCTTAGGCTCGTTTATTGTAGAACgtaagtttttgtttttctcattttctctatctcccattctctagtttttgggatttcaggcattcttatggtgtttgaaatttatttatttatttatcaatttctaaatatgatcttatcctggtgctttag

Basic information

species Vitis vinifera
transcript Vv05s0051g00930.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0051g00930.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G67320.2 (Arabidopsis thaliana), 5'ss of exon 3
GCGATCTATGGAAGGCAAATATGAGGCATCCACAGGCATCTGAGTTTGTCAACAAGGATATAATTTCCCACTTTGTTCTTAGGCTCGTTTATTGTAGAACgtaagtttttgtttttctcattttctctatctcccattctctagtttttgggatttcaggcattcttatggtgtttgaaatttatttatttatttatcaatttctaaatatgatcttatcctggtgctttag
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AGACTTTGTGGAAAGAACATATGAGACTTTCGAATGTTTCAGAAATGATCAATAAGGATATAATCTCGCATTTTGTTCTTCGTCTCGTTTATTGTAGATCgtaagctcttcttactcttgtgcctttgagtt---attgttttgtctt--agattttag---tttctatagttttta----ttctttcttgattt--tgatttttaag------------------------