Sequence
atgc intronic sequence ATGC exonic sequenceACCGTACAACTGGTGGCAAAGGAGTCCCCTGCTTTTCATGTGCCTTCCCAGATGCACCAATTAGAGAGACATATCAACCCCGCTGGGATGGGTGGGGAAGgtatccttcaatctgctttctccaatttttcagttttgcctaatgcaactattgtggttcaatcatttttatttgaaacctatagtggaatctaaatcaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0051g00640.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G03220.1 (Glycine max), 5'ss of exon 3
ACCGTACAACTGGTGGCAAAGGAGTCCCCTGCTTTTCATGTGCCTTCCCAGATGCACCAATTAGAGAGACATATCAACCCCGCTGGGATGGGTGGGGAAGgtatccttcaatctgctttctc-caattttt-cagttttgcct-aatgcaactattgtggttcaatcatttttatttgaaacctatagtggaatctaaatcaa
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ATCTTACAACTGGTGGAAAGGGAGCTTCATGTTATTCATGTGCATTTCCAGATGCTCCTATTAGAGAGACATATCAACCCCGATGGGATGGGTGGGGAAGgtaacctattctgtgttctgtgacagtatatgtaatcaagtcttagtttaaatatactaatctaattgtatgt---tgaagtgttgaacaaaacaataacttg
upper sequence: Vv05s0051g00640.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT4G13700.1 (Arabidopsis thaliana), 5'ss of exon 3
ACCGTACAACTGGTGGCAAAGGAGTCCCCTGCTTTTCATGTGCCTTCCCAGATGCACCAATTAGAGAGACATATCAACCCCGCTGGGATGGGTGGGGAAGgtatccttcaatctgctttctc-caatttttcagttttgcctaatgcaactattgtggttca-atcatttttatttgaaacctatagtggaatctaaatcaa
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ATCGTACTATTGGTGGTAAAGGAGTTCCATGCTTCTCATGTTCGTTTCCTGATGCACCTATAAGGGAGACTTATCAACCTCGCTGGGATGCTTGGGGAAGgtaaaacttactatgtgggttaacaagttaggagttg-----aagaactctgtgttggtcgagatcagctttgga-gtaattaattttttatttgtgtgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71884280|gb|DT033335.1|DT033335EST: GATGCACCAATTAGAGAGACATATCAACCCCGCTGGGATGGGTGGGGAAG ATTTATGGAGCCCTTAACATCAAGAGTTCCTATGATGGTGATTGAAAGCAA
genomic: GATGCACCAATTAGAGAGACATATCAACCCCGCTGGGATGGGTGGGGAAGgtatccttca ... ggaagttcagATTTATGGAGCCCTTAACATCAAGAGTTCCTATGATGGTGATTGAAGGCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACCGTACAACTGGTGGCAAAGGAGTCCCCTGCTTTTCATGTGCCTTCCCAGATGCACCAATTAGAGAGACATATCAACCCCGCTGGGATGGGTGGGGAAGgtatccttcaatctgctttctccaatttttcagttttgcctaatgcaactattgtggttcaatcatttttatttgaaacctatagtggaatctaaatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttctcc