1 5' 3' | 2 5' 3' | 3 5' 3' |
TGATAGCTATGCATCATATGTTGGCCACTACCCCTTACTGGCGTATTTTGCTATTGCTGAAAACGAATCAATTGGAAGAGAGCGCTACAATTTTATGCAGgtttgctctatgtattatagtagttgtattgcagttttctttaaaattgttgtttaatgaacaaattgagaaaaggaatttaaggtatgatcatatttac...
species | Vitis vinifera |
transcript | Vv05s0049g01230.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTATTGCTGAAAACGAATCAATTGGAAGAGAGCGCTACAATTTTATGCAG AAAATGCTTTTGCCTTGCGGTCTCCCCCCTGAAAGAGAGGACGATTGATTGEST: gi|110686941|gb|EE063919.1|EE063919
genomic: CTATTGCTGAAAACGAATCAATTGGAAGAGAGCGCTACAATTTTATGCAGgtttgctcta ... tcccaaacagAAAATGCTTTTGCCTTGCGGTCTCCCCCCTGAAAGAGAGGACGATTGATTG
EST: CTATTGCTGAAAACGAATCAATTGGAAGAGAGCGCTACAATTTTATGCAG AAAATGCTTTTGCCTTGCGGTCTCCCCCCTGAAAGAGAGGACGATTGATTGEST: gi|34319691|gb|CF372445.1|CF372445
genomic: CTATTGCTGAAAACGAATCAATTGGAAGAGAGCGCTACAATTTTATGCAGgtttgctcta ... tcccaaacagAAAATGCTTTTGCCTTGCGGTCTCCCCCCTGAAAGAGAGGACGATTGATTG
EST: CTATTGCTGAAAACGAATCAATTGGAAGAGAGCGCTACAATTTTATGCAG AAAATGCTTTTGCCTTGCGGTCTCCCCCCTGAAAGAGAGGACGATTGATTGEST: gi|32459229|gb|CD800403.1|CD800403
genomic: CTATTGCTGAAAACGAATCAATTGGAAGAGAGCGCTACAATTTTATGCAGgtttgctcta ... tcccaaacagAAAATGCTTTTGCCTTGCGGTCTCCCCCCTGAAAGAGAGGACGATTGATTG
EST: CTATTGCTGAAAACGAATCAATTGGAAGAGAGCGCTACAATTTTATGCAG AAAATGCTTTTGCCTTGCGGTCTCCCCCCTGAAAGAGAGGACGATTGATTGEST: gi|77582166|gb|DV220044.1|DV220044
genomic: CTATTGCTGAAAACGAATCAATTGGAAGAGAGCGCTACAATTTTATGCAGgtttgctcta ... tcccaaacagAAAATGCTTTTGCCTTGCGGTCTCCCCCCTGAAAGAGAGGACGATTGATTG
EST: CTATT-CTGAAAACGAATCAATTGGAAGAGAGCGCTACAATTTTATGCAG AAAATGCTTTTGCCTTGCGGTCTCCCCCCTGAAAGAGAGGACGATTGATTGEST: gi|34414891|gb|CF413645.1|CF413645
genomic: CTATTGCTGAAAACGAATCAATTGGAAGAGAGCGCTACAATTTTATGCAGgtttgctcta ... tcccaaacagAAAATGCTTTTGCCTTGCGGTCTCCCCCCTGAAAGAGAGGACGATTGATTG
EST: CTATTGCTGAAAACGAATCAATTGGAAGAGAGCGCTACAATTTTATGCAG AAAATGCTTTTCCCTTGCGGTCTCCCCCCTGAAAGAGAGGACGATTGATTGEST: gi|110687101|gb|EE064219.1|EE064219
genomic: CTATTGCTGAAAACGAATCAATTGGAAGAGAGCGCTACAATTTTATGCAGgtttgctcta ... tcccaaacagAAAATGCTTTTGCCTTGCGGTCTCCCCCCTGAAAGAGAGGACGATTGATTG
EST: CTATTGCTGAAAACGAATCAATTGGAAGAGAGCGCTACAAGTTTATGCAG AAAATGCTTTTGCCTTGCGGTCTCCCCCCTGAAAGAGAGGACGATTGATTGEST: gi|110420732|gb|EC987012.1|EC987012
genomic: CTATTGCTGAAAACGAATCAATTGGAAGAGAGCGCTACAATTTTATGCAGgtttgctcta ... tcccaaacagAAAATGCTTTTGCCTTGCGGTCTCCCCCCTGAAAGAGAGGACGATTGATTG
EST: CTATTGCTGAAAACGAATCAATTGGAAGAGAGCGCTACAATTTTATGCAG AAAATGCTTTTGCCTTGCGGTCTCCCCCCTGAAAGAGAGGACGATTGATTGEST: gi|77586653|gb|DV222455.1|DV222455
genomic: CTATTGCTGAAAACGAATCAATTGGAAGAGAGCGCTACAATTTTATGCAGgtttgctcta ... tcccaaacagAAAATGCTTTTGCCTTGCGGTCTCCCCCCTGAAAGAGAGGACGATTGATTG
EST: CTATTGCTGAAAACGAATCAATTGGAAGAGAGCGCTACAATTTTATGCAG AAAATGCTTTTGCCTTGCGGTCTCCCCCCTGAAAGAGAGGACGATTGATTGEST: gi|110394837|gb|EC960188.1|EC960188
genomic: CTATTGCTGAAAACGAATCAATTGGAAGAGAGCGCTACAATTTTATGCAGgtttgctcta ... tcccaaacagAAAATGCTTTTGCCTTGCGGTCTCCCCCCTGAAAGAGAGGACGATTGATTG
EST: CTATTGCTGAAAACGAATCAATTGGAAGAGAGCGCTACAATTTTATGCAG AAAATGCTTTTGCCTTGCGGTCTCCCCCCTGAAAGAGAGGACGATTGATTGEST: gi|110731061|gb|EE108849.1|EE108849
genomic: CTATTGCTGAAAACGAATCAATTGGAAGAGAGCGCTACAATTTTATGCAGgtttgctcta ... tcccaaacagAAAATGCTTTTGCCTTGCGGTCTCCCCCCTGAAAGAGAGGACGATTGATTG
EST: CTATTGCTGAAAACGAATCAATTGGAAGAGAGCGCTACAATTTTATGCAG AAAATGCTTTTGCCTTGCGGTCTCCCCCCTGAAAGAGAGGACGATTGATTGEST: gi|110419282|gb|EC985499.1|EC985499
genomic: CTATTGCTGAAAACGAATCAATTGGAAGAGAGCGCTACAATTTTATGCAGgtttgctcta ... tcccaaacagAAAATGCTTTTGCCTTGCGGTCTCCCCCCTGAAAGAGAGGACGATTGATTG
EST: CTATTGCTGAAAACGAATCAATTGGAAGAGAGCGCTACAATTTTATGCAG AAAATGCTTTTGCCTTGCGGTCTCCCCCCTGAAAGAGAGGACGATTGATTGEST: gi|110695800|gb|EE074233.1|EE074233
genomic: CTATTGCTGAAAACGAATCAATTGGAAGAGAGCGCTACAATTTTATGCAGgtttgctcta ... tcccaaacagAAAATGCTTTTGCCTTGCGGTCTCCCCCCTGAAAGAGAGGACGATTGATTG
EST: CTATTGCTGAAAACGAATCAATTGGAAGAGAGCGCTACAATTTTATGCAG AAAATGCTTTTGCCTTGCGGTCTCCCCCCTGAAAGAGAGGACGATTGATTG
genomic: CTATTGCTGAAAACGAATCAATTGGAAGAGAGCGCTACAATTTTATGCAGgtttgctcta ... tcccaaacagAAAATGCTTTTGCCTTGCGGTCTCCCCCCTGAAAGAGAGGACGATTGATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATAGCTATGCATCATATGTTGGCCACTACCCCTTACTGGCGTATTTTGCTATTGCTGAAAACGAATCAATTGGAAGAGAGCGCTACAATTTTATGCAGgtttgctctatgtattatagtagttgtattgcagttttctttaaaattgttgtttaatgaacaaattgagaaaaggaatttaaggtatgatcatatttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaaaa