Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggagggtattaacatggatctccatagaacacttcaggaatttgtgcattctgctatagacagcgtagttttgcatgtttttcattttgattcttt...

Basic information

species Vitis vinifera
transcript Vv05s0029g00060.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77578980|gb|DV218321.1|DV218321
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         CATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCAT
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcagCATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCAT
EST: gi|349807865|gb|FQ402256.1|FQ402256
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         CATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCAT
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcagCATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCAT
EST: gi|71890565|gb|DT039620.1|DT039620
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         CATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCAT
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcagCATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCAT
EST: gi|349812708|gb|FQ409867.1|FQ409867
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         CATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCAT
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcagCATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCAT
EST: gi|71873838|gb|DT022893.1|DT022893
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|71873838|gb|DT022893.1|DT022893
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|71873838|gb|DT022893.1|DT022893
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|71873838|gb|DT022893.1|DT022893
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|71873838|gb|DT022893.1|DT022893
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|71873838|gb|DT022893.1|DT022893
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|71873838|gb|DT022893.1|DT022893
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|71873838|gb|DT022893.1|DT022893
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|71873838|gb|DT022893.1|DT022893
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|71873838|gb|DT022893.1|DT022893
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|110372532|gb|EC936708.1|EC936708
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|110372532|gb|EC936708.1|EC936708
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|110372532|gb|EC936708.1|EC936708
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|110372532|gb|EC936708.1|EC936708
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|110372532|gb|EC936708.1|EC936708
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|110372532|gb|EC936708.1|EC936708
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|110372532|gb|EC936708.1|EC936708
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|110372532|gb|EC936708.1|EC936708
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|110372532|gb|EC936708.1|EC936708
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|110372532|gb|EC936708.1|EC936708
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|71871639|gb|DT020694.1|DT020694
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         CATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCAT
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcagCATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCAT
EST: gi|352786484|gb|FQ479093.1|FQ479093
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|352786484|gb|FQ479093.1|FQ479093
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|352786484|gb|FQ479093.1|FQ479093
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|352786484|gb|FQ479093.1|FQ479093
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|352786484|gb|FQ479093.1|FQ479093
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|352786484|gb|FQ479093.1|FQ479093
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|352786484|gb|FQ479093.1|FQ479093
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|352786484|gb|FQ479093.1|FQ479093
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|352786484|gb|FQ479093.1|FQ479093
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|352786484|gb|FQ479093.1|FQ479093
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|71890799|gb|DT039854.1|DT039854
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         CATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCAT
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcagCATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCAT
EST: gi|110381320|gb|EC946647.1|EC946647
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|110381320|gb|EC946647.1|EC946647
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|110381320|gb|EC946647.1|EC946647
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|110381320|gb|EC946647.1|EC946647
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|110381320|gb|EC946647.1|EC946647
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|110381320|gb|EC946647.1|EC946647
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|110381320|gb|EC946647.1|EC946647
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|110381320|gb|EC946647.1|EC946647
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|351039396|gb|FQ461263.1|FQ461263
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|351039396|gb|FQ461263.1|FQ461263
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|351039396|gb|FQ461263.1|FQ461263
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|351039396|gb|FQ461263.1|FQ461263
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|351039396|gb|FQ461263.1|FQ461263
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|351039396|gb|FQ461263.1|FQ461263
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|351039396|gb|FQ461263.1|FQ461263
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|351039396|gb|FQ461263.1|FQ461263
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|351039396|gb|FQ461263.1|FQ461263
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|351039396|gb|FQ461263.1|FQ461263
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|349823439|gb|FQ423250.1|FQ423250
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACC                         CATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCAT
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcagCATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCAT
EST: gi|71864683|gb|DT013738.1|DT013738
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         CATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCAT
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcagCATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCAT
EST: gi|71868560|gb|DT017615.1|DT017615
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|71868560|gb|DT017615.1|DT017615
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|71868560|gb|DT017615.1|DT017615
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|71868560|gb|DT017615.1|DT017615
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|71868560|gb|DT017615.1|DT017615
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|71868560|gb|DT017615.1|DT017615
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|71868560|gb|DT017615.1|DT017615
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|71868560|gb|DT017615.1|DT017615
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|351046057|gb|FQ441440.1|FQ441440
EST:     AAATACCGGTTGGGGAGGCAATCATGCAAGGAGTTAACTGACAACT                         CATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCAT
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcagCATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCAT
EST: gi|161713162|gb|FC062502.1|FC062502
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|161713162|gb|FC062502.1|FC062502
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|161713162|gb|FC062502.1|FC062502
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|161713162|gb|FC062502.1|FC062502
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|161713162|gb|FC062502.1|FC062502
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|161713162|gb|FC062502.1|FC062502
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|161713162|gb|FC062502.1|FC062502
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|161713162|gb|FC062502.1|FC062502
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|161713162|gb|FC062502.1|FC062502
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|161713162|gb|FC062502.1|FC062502
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|71877393|gb|DT026448.1|DT026448
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         CATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCAT
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcagCATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCAT
EST: gi|349820030|gb|FQ404752.1|FQ404752
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         CATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCAT
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcagCATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCAT
EST: gi|110374025|gb|EC938502.1|EC938502
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|110374025|gb|EC938502.1|EC938502
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|110374025|gb|EC938502.1|EC938502
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|110374025|gb|EC938502.1|EC938502
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|110374025|gb|EC938502.1|EC938502
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|110374025|gb|EC938502.1|EC938502
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|110374025|gb|EC938502.1|EC938502
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|110374025|gb|EC938502.1|EC938502
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|33401619|gb|CF207246.1|CF207246
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|33401619|gb|CF207246.1|CF207246
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|33401619|gb|CF207246.1|CF207246
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|33401619|gb|CF207246.1|CF207246
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|33401619|gb|CF207246.1|CF207246
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|33401619|gb|CF207246.1|CF207246
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|33401619|gb|CF207246.1|CF207246
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|33401619|gb|CF207246.1|CF207246
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|351046098|gb|FQ442476.1|FQ442476
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|351046098|gb|FQ442476.1|FQ442476
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|351046098|gb|FQ442476.1|FQ442476
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|351046098|gb|FQ442476.1|FQ442476
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|351046098|gb|FQ442476.1|FQ442476
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|351046098|gb|FQ442476.1|FQ442476
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|351046098|gb|FQ442476.1|FQ442476
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|351046098|gb|FQ442476.1|FQ442476
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|351046098|gb|FQ442476.1|FQ442476
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|351046098|gb|FQ442476.1|FQ442476
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         G
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcag-
EST: gi|351045231|gb|FQ451679.1|FQ451679
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         CATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCAT
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcagCATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCAT
EST: gi|110427496|gb|EC993936.1|EC993936
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|110427496|gb|EC993936.1|EC993936
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|110427496|gb|EC993936.1|EC993936
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|110427496|gb|EC993936.1|EC993936
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|110427496|gb|EC993936.1|EC993936
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|110427496|gb|EC993936.1|EC993936
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|110427496|gb|EC993936.1|EC993936
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|110427496|gb|EC993936.1|EC993936
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|71871109|gb|DT020164.1|DT020164
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|71871109|gb|DT020164.1|DT020164
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|71871109|gb|DT020164.1|DT020164
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|71871109|gb|DT020164.1|DT020164
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|71871109|gb|DT020164.1|DT020164
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|71871109|gb|DT020164.1|DT020164
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|71871109|gb|DT020164.1|DT020164
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|71871109|gb|DT020164.1|DT020164
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|71871652|gb|DT020707.1|DT020707
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         CATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCAT
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcagCATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCAT
EST: gi|71867598|gb|DT016653.1|DT016653
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|71867598|gb|DT016653.1|DT016653
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|71867598|gb|DT016653.1|DT016653
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|71867598|gb|DT016653.1|DT016653
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|71867598|gb|DT016653.1|DT016653
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|71867598|gb|DT016653.1|DT016653
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|71867598|gb|DT016653.1|DT016653
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|71867598|gb|DT016653.1|DT016653
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGT                        
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAAC--Tgtaaggaggg ... tggattgca
EST: gi|351043504|gb|FQ428976.1|FQ428976
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         CATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCAT
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcagCATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCAT
EST: gi|352790540|gb|FQ478180.1|FQ478180
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         CATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCAT
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcagCATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCAT
EST: gi|351055909|gb|FQ453370.1|FQ453370
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         CATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCAT
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcagCATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCAT
EST: gi|71873299|gb|DT022354.1|DT022354
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         CATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCAT
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcagCATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCAT
EST: gi|110358181|gb|EC922212.1|EC922212
EST:     AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACT                         CATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCAT
genomic: AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggaggg ... tggattgcagCATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTgtaaggagggtattaacatggatctccatagaacacttcaggaatttgtgcattctgctatagacagcgtagttttgcatgtttttcattttgattcttt

- - - - - - -  AAGCAA
- - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atagaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caggaat