1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CGCCGACTCACTCTATATAAAACTGGTGGAGGAGCTTGACAGGTGCACCCTCAGCTATTTTGGCTTTCACTGGACCCAGGCTTCTCTTATGATCAATCAGgtacatacatgtatattcaaaacaaagagagacggagcatcaatttctctttgcttccttcgtaaagaatctgagcagtttttgtggtatgagttgcag
species | Vitis vinifera |
transcript | Vv05s0020g04850.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCAGCTATTTTGGCTTTCACTGGACCCAGGCTTCTCTTATGATCAATCAG GTGTTGAGTGTGGAGTCTGATAAEST: gi|161714762|gb|FC062693.1|FC062693
genomic: TCAGCTATTTTGGCTTTCACTGGACCCAGGCTTCTCTTATGATCAATCAGgtacatacat ... tgagttgcagGTGTTGAGTGTGGAGTCTGATAA
EST: TCAGCTATTTTGCCTTTCACTGGACCCAGGCTTCTCTTATGATCAATCAG GTGTTGAGTGTGGAGTCTGATAAGCAGAAAACGAAGCTCAAGAACTTTGTGEST: gi|161716087|gb|FC065839.1|FC065839
genomic: TCAGCTATTTTGGCTTTCACTGGACCCAGGCTTCTCTTATGATCAATCAGgtacatacat ... tgagttgcagGTGTTGAGTGTGGAGTCTGATAAGCAGAAAACGAAGCTCAAGAACTTTGTG
EST: TCAGCTATTTTGCCTTTCACTGGACCCAGGCTTCTCTTATGATCAATCAG GTGTTGAGTGTGGAGTCTGATAAGCAGAAAACGAAGCTCAAGAACTTTGTGEST: gi|161713612|gb|FC062532.1|FC062532
genomic: TCAGCTATTTTGGCTTTCACTGGACCCAGGCTTCTCTTATGATCAATCAGgtacatacat ... tgagttgcagGTGTTGAGTGTGGAGTCTGATAAGCAGAAAACGAAGCTCAAGAACTTTGTG
EST: TCAGCTATTTTGGCTTTCACTGGACCCAGGCTTCTCTTATGATCAATCAG GTGTTGAGTGTGGAGTCTGATAAGCAGAAAACGAAGCTCAAGAACTTTGTG
genomic: TCAGCTATTTTGGCTTTCACTGGACCCAGGCTTCTCTTATGATCAATCAGgtacatacat ... tgagttgcagGTGTTGAGTGTGGAGTCTGATAAGCAGAAAACGAAGCTCAAGAACTTTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCCGACTCACTCTATATAAAACTGGTGGAGGAGCTTGACAGGTGCACCCTCAGCTATTTTGGCTTTCACTGGACCCAGGCTTCTCTTATGATCAATCAGgtacatacatgtatattcaaaacaaagagagacggagcatcaatttctctttgcttccttcgtaaagaatctgagcagtttttgtggtatgagttgcag
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