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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGACTCCTTAGACACACTAGCTTTATTGGGTGACCGAGAGCGGTTTGCTACCTCAGTTGAATGGATTGGTAAAAACCTTCGGTTTGATATTgtgagtaatgctcttttcttgcattaatgatatgacctattgtttttggggtgtcttgttgcccataatacattgacagcttcacttggtcaaatattag...

Basic information

species Vitis vinifera
transcript Vv05s0020g04650.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g04650.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G32320.1 (Glycine max), 5'ss of exon 2
ATTGACTCCTTAGACACACTAGCTTTATTGGGTGACCGAGAGCGGTTTGCTACCTCAGTTGAATGGATTGGTAAAAACCTTCGGTTTGATATTgtgagtaatgctcttttcttgcattaatgatatgacctattgtttttggggtgtcttgttgcccataat-acattgacagcttcacttggtcaaatattag
|||||||| ||||||||  | |||||| | ||||||||  | || ||  || | || |||||||||||||||||||| ||||| |||||||| ||||||| |  | ||          ||  || |    | || |  ||      ||   |    |||      ||| | |  | | || |||    |   ||
ATTGACTCTTTAGACACTTTGGCTTTACTTGGTGACCGCCAACGATTCTCTGCTTCCGTTGAATGGATTGGTAAAAATCTTCGCTTTGATATAgtgagtattagtattcgtcc-----aaccattt--tttgttttcattaataattccattcatacatttccgtatttatatttgctctgggttgctttgcag

upper sequence: Vv05s0020g04650.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G43710.1 (Arabidopsis thaliana), 5'ss of exon 3
ATTGACTCCTTAGACACACTAGCTTTATTGGGTGACCGAGAGCGGTTTGCTACCTCAGTTGAATGGATTGGTAAAAACCTTCGGTTTGATATTgtgagtaatgctcttttcttgcattaatgatatgaccta-ttgtttttggggtgtctt--gttgcccataatacattgacagcttcacttggtcaaatattag-----------------------------------
|||||||| || || ||| |||||||| | |||||||||||||| ||  || | || |||||||||||||||||||| |||| |||| |||| |||||||||| |   || | || |   |   | || | | || |  |||   | |  |    | | | |  || |      |  | |  | | |    | |                                     
ATTGACTCGTTGGATACATTAGCTTTACTTGGTGACCGAGAGCGCTTCACTTCTTCTGTTGAATGGATTGGTAAAAATCTTCAGTTTAATATAgtgagtaatgattggttttggcttctctagcaagatcaagttataattgttattttctcaaatactccttttagaacttttgtatgatgtagcctggcagtgaagttgatgaaatgatacatgtctttttaactgcag