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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTCTGGGGAGTAGATTCTGAAGGCCATCTTGTTCTTTCTGATGATGAAGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttatatgttttgcatattgaatccatagtttggggaaaccatttcatcattgtttgagtttttccatgggaacctactcgcatgtttcaaatgg...

Basic information

species Vitis vinifera
transcript Vv05s0020g04160.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g04160.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT3G22850.1 (Arabidopsis thaliana), 5'ss of exon 3
TTCTTCTGGGGAGTAGATTCTGAAGGCCATCTTGTTCTTTCTGATGATGAAGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtat-tgtta---tatgttttgcatattgaatccatagtttggggaaaccatttcatcattgtttgagtttttccatgggaacctactcgcatgtttcaaatgg
 ||| |||||||   ||| ||||||| ||||||||| ||||||||||||  |||||||| |||||||| ||||| | ||| ||||| ||||| ||||||||||| |   |     | ||| |  | |||||  |||      |       || |  |     | ||| ||      |||     |    ||||  | ||     
CTCTACTGGGGAACCGATGCTGAAGGACATCTTGTTGTTTCTGATGATGTTGAGACTGTCAAGAAGGGTTGTGGTAAATCCTTTGCGCCATTCCCTAAAGgtatgtagcaagccgtttttcgggttttgaagacatctcactgttctttgatctagtgcaaatatgaattaggatgtggttgtgtgtatgcataatgcag----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161714833|gb|FC063281.1|FC063281
EST:     AGAGACTGTGAAGAAGGGCTGTGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCCTA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGC-TA
EST: gi|110703796|gb|EE080954.1|EE080954
EST:     AGAGACTG-GAAGAAGGGCTGTGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
EST: gi|110398107|gb|EC964229.1|EC964229
EST:     AGAGACTGTGAAGAAGGGCTGTGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
EST: gi|34320344|gb|CF373098.1|CF373098
EST:     AGAGACTGTGAAGAAGGGCTGTGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
EST: gi|110400967|gb|EC967556.1|EC967556
EST:     AGAGACTGTGAAGAAGGGCTGTGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
EST: gi|110395495|gb|EC961161.1|EC961161
EST:     AGAGACTGTGAAGAAGGGCTGTGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
EST: gi|110413953|gb|EC979772.1|EC979772
EST:     AGAGACTGTGAAGAAGGGCTGCGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
EST: gi|110386775|gb|EC951398.1|EC951398
EST:     AGAGACTGTGAAGAAGGGCTGCGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
EST: gi|110392675|gb|EC956897.1|EC956897
EST:     AGAGACTGTGAAGAAGGGCTGTGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
EST: gi|30304294|gb|CB981088.1|CB981088
EST:     AGAGACTGTGAAGAAGGGCTGTGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
EST: gi|110722819|gb|EE099425.1|EE099425
EST:     AGAGACTGTGAAGAAGGGCTGTGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCCAA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
EST: gi|110390441|gb|EC955350.1|EC955350
EST:     AGAGACTGTGAAGAAGGGCTGTGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
EST: gi|110720299|gb|EE096101.1|EE096101
EST:     AGAGACTGTGAAGAAGGGCTGTGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAAGTTTGAGGAGTTTTGAGCACCCGCTAA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
EST: gi|71871976|gb|DT021031.1|DT021031
EST:     AGAGACTGTGAAGAAGGGCTGTGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTGAGGAG
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAG
EST: gi|110368629|gb|EC932617.1|EC932617
EST:     AGAGACTGTGAAGAAGGGCTGCGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
EST: gi|110398374|gb|EC964689.1|EC964689
EST:     AGAGACTGTGAAGAAGGGCTGCGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
EST: gi|30304354|gb|CB981148.1|CB981148
EST:     AGAGACTGTGAAGAAGGGCTGTGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
EST: gi|110693244|gb|EE069306.1|EE069306
EST:     AGAGACTGTGAAGAAGGGCTGTGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
EST: gi|110695485|gb|EE073558.1|EE073558
EST:     AGAAGGGCTGTGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
genomic: AGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
EST: gi|110390708|gb|EC955632.1|EC955632
EST:     AGAGACTGTGAAGAAGGGCTGCGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
EST: gi|71866119|gb|DT015174.1|DT015174
EST:     AGAGACTGTGAAGAANGGCTGCGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGA
EST: gi|110732240|gb|EE107353.1|EE107353
EST:     AGAGACTGTGAAGAAGGGCTGTGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
EST: gi|33404399|gb|CF210026.1|CF210026
EST:     AGAGACTGTGAAGAAGGGCTGTGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
EST: gi|22007717|gb|BQ792751.1|BQ792751
EST:     AGAGACTGTGAAGAAGGGCTGTGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
EST: gi|110719147|gb|EE096788.1|EE096788
EST:     AGAGACTGTGAAGAAAGGCTGTGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAAGTTTGAGGAGTTTT
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTT
EST: gi|110719525|gb|EE094727.1|EE094727
EST:     AGAGACTGTGAAGAAAGGCTGTGGGAAATCTTTTGCTCCATTTCCTAAAA                         GATGCTTCTTTACAACCTCTGGAAGTTTGAGGAGTTTTGAGCACCCGCTAA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
EST: gi|110689126|gb|EE065077.1|EE065077
EST:     AGAGACTGTGAAGAAGGGCTGCGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
EST: gi|26263940|gb|CA815003.1|CA815003
EST:     AGAGACTGTGAAGAAGGGCTGTGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
EST: gi|351027154|gb|FQ440016.1|FQ440016
EST:     AGAGACTGTGAAGAAGGGCTGTGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
EST: gi|110730595|gb|EE107855.1|EE107855
EST:     AGAGACTGTGAAGAAGGGCTGTGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTGAGGAATTTTGAGCACCCGCTAA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
EST: gi|110684920|gb|EE062747.1|EE062747
EST:     AGAGACTGTGAAGAAGGGCTGTGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
EST: gi|110685279|gb|EE063522.1|EE063522
EST:     AGAGACTGTGAAGAAGGGCTGTGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
EST: gi|51051175|gb|CO818923.1|CO818923
EST:     AGAGACTGTGAAGAAGGGCTGTGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
EST: gi|22011644|gb|BQ796678.1|BQ796678
EST:     AGAGACTGTGAAGAAGGGCTGTGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
EST: gi|87585474|gb|DY474177.1|DY474177
EST:     AGAGACTGTGAAGAAGGGCTGCGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTG
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTG
EST: gi|110372611|gb|EC936793.1|EC936793
EST:     AGAGACTGTGAAGAAGGGCTGCGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
EST: gi|34549368|gb|CF517600.1|CF517600
EST:     AGAGACTGTGAAGAAGGGCTGCGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
EST: gi|110688943|gb|EE068071.1|EE068071
EST:     AGAGACTGTGAAGAAGGGCTGCGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
EST: gi|110718953|gb|EE096378.1|EE096378
EST:     AGAGACTGTGAAGAAGGGCTGTGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
EST: gi|110407788|gb|EC973403.1|EC973403
EST:     AGAGACTGTGAAGAAGGGCTGCGGGAAATCTTTTGCTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
EST: gi|33407951|gb|CF213578.1|CF213578
EST:     AGAGACTGTGAAGAAGGGCTGTGGGAAATCTTTTGTTCCATTTCCTAAAG                         GATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA
genomic: AGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttat ... ttcttctcagGATGCTTCTTTACAACCTCTGGAGGTTTGAGGAGTTTTGAGCACCCGCTAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCTTCTGGGGAGTAGATTCTGAAGGCCATCTTGTTCTTTCTGATGATGAAGAGACTGTGAAGAAGGGCTGTGGGATATCTTTTGCTCCATTTCCTAAAGgtattgttatatgttttgcatattgaatccatagtttggggaaaccatttcatcattgtttgagtttttccatgggaacctactcgcatgtttcaaatgg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggaacc