Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTTGGAGTGCTCAGCTGGCGATTAGATGCTGATAACTATGAAACAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacctaacttacttttttcattcagaaaaaggaaattgttctccaattctttcagtttgtgccttgaatttataccatagcctatagttaagtctgtataatataagtggaaatggatgtaaacattttctccag

Basic information

species Vitis vinifera
transcript Vv05s0020g04080.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g04080.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G28860.2 (Glycine max), 5'ss of exon 3
AACTTGGAGTGCTCAGCTGGCGATTAGATGCTGATAACTATGAAACAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacctaacttacttttttcattcagaaaaaggaaattgttctccaattctttcagtttgtgccttgaatttataccatagcctatagttaagtctgtataatataagtggaaatggatgtaaacattttctccag
|||||||||| || ||||||  | |||||||||||||| ||||||  |||   ||  ||||||||||||||||||  ||||| ||| |||||||||||||| |    | |  ||  |   | |       |   || | | || | | ||    | | |      ||||| |||         |||    || | || | ||                                  
AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttatactaatgtctcatcataatggctttgaattaactttccttctactc----aatataaa---tgaatatatgttgagaaatatcaacaa-tatgcaaaag---------------------------------

upper sequence: Vv05s0020g04080.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT4G14716.1 (Arabidopsis thaliana), 5'ss of exon 3
AACTTGGAGTGCTCAGCTGGCGATTAGATGCTGATAACTATGAAACAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacctaacttacttttttcattcagaaaaaggaaattgttctccaattctttcagtttgtgccttgaatttataccatagcctatagttaagtctgtataatataagtggaaatggatgtaaacattttctccag
| || ||||| || |||||| || | |||||||||||||||||||| |||||||| ||||| ||||| |||||| | ||||| ||||| ||||||||||||   ||   ||  |||  |    ||  | |    ||| ||       || |||  ||    | |||   || |  |  |||    |   | | |||   |   || | |  |||  | |  |||            
AGCTGGGAGTACTTAGCTGGAGACTTGATGCTGATAACTATGAAACCGATGAGGATTTGAAAAAGATCCGTGAATCTCGTGGTTACTCTTACATGgtttgtggtctttatttatttactatcccactagacttgaatggtagat-gtttatttttgtccaagtcttattttaactctctaggggttttctcaatcttggtttgatgattaaaaagtgttcaaaatgcag-------

upper sequence: Vv05s0020g04080.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT2G26400.1 (Arabidopsis thaliana), 5'ss of exon 3
AACTTGGAGTGCTCAGCTGGCGATTAGATGCTGATAACTATGAAACAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcac-ctaacttacttttttcattcagaaaaaggaaattgttctccaattctttcagtttgtgccttgaatttataccatagcctatagttaagtctgtataatataagtggaaatggatgtaaacatttt-ctccag
| |||||||| ||  ||||| || | |||||||||||||||||||| |||||||||||||| | ||| || ||| | ||||| |||||||||||||||||| ||  | | ||  |   ||  || |  |        |  ||   |  || ||| |              ||  |    |||   ||  |||| | |   |  |  |   | |||   || |  |  |||   |  ||
AGCTTGGAGTACTTTGCTGGAGACTTGATGCTGATAACTATGAAACCGATGAGGAATTGAAAAGGATCCGCGAATCTCGTGGTTACTCCTACATGgtttgtgacatttatttgatgcctttttttaatatcttcctttgtttggtctttttttttaacaaaaaataaatcttcgtttgttagttgattattaaatattcgtttttgattcgcaaac--atttggatgtttggttttag

upper sequence: Vv05s0020g04080.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT4G14710.1 (Arabidopsis thaliana), 5'ss of exon 3
AACTTGGAGTGCTCAGCTGGCGATTAGATGCTGATAACTATGAAACAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtc-accta-acttacttttttcattcagaaa---aaggaaattgttctccaattctttcagtttgtgccttgaatttataccatagcctatagttaagtctgtataatataagtggaaatggatgtaaacattttctccag--------------------------------------------
| || ||||| || |||||| || | |||||||||||||||||||| |||||||| ||||| ||||| || ||| | ||||| ||||| ||||||||||||  |  || ||||   |  |  ||    |      |  || |  |  |  || ||| |  | || | |     | || || ||    || ||  | | | | | ||  | || | |     ||| |  | ||| | |   |                                            
AGCTGGGAGTACTTAGCTGGAGACTTGATGCTGATAACTATGAAACCGATGAGGATTTGAAAAAGATCCGCGAATCTCGTGGTTACTCTTACATGgtttgtttatatagacttgaatgctagatgtttacttttgaacaagtcttgttttaactctctagggttttactc---aattgtaacacttactcta-ctgaatgtatttaggaaaattcgttgatgatttgcaaattgttttatgtgcttgagtcttggtttgatgatggaaaagtgttcaaaatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28959685|gb|CB339843.1|CB339843
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|110713746|gb|EE089937.1|EE089937
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|110421959|gb|EC988266.1|EC988266
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|30296431|gb|CB973225.1|CB973225
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|110701874|gb|EE079942.1|EE079942
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|33401763|gb|CF207390.1|CF207390
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|110702193|gb|EE080629.1|EE080629
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|30304245|gb|CB981039.1|CB981039
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|28958843|gb|CB339421.1|CB339421
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|34544397|gb|CF512629.1|CF512629
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|110410229|gb|EC975907.1|EC975907
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|26267306|gb|CA818369.1|CA818369
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|110711319|gb|EE087674.1|EE087674
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|110370005|gb|EC934179.1|EC934179
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|27586811|gb|CB009506.1|CB009506
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|110429045|gb|EC995532.1|EC995532
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|351018907|gb|FQ426406.1|FQ426406
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|30303116|gb|CB979910.1|CB979910
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|30303177|gb|CB979971.1|CB979971
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|22011493|gb|BQ796527.1|BQ796527
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|30305201|gb|CB981995.1|CB981995
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GACTTTTGAGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|110720418|gb|EE096325.1|EE096325
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|110363595|gb|EC927194.1|EC927194
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|110723038|gb|EE099892.1|EE099892
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|71856794|gb|DT005849.1|DT005849
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|30304592|gb|CB981386.1|CB981386
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|30295842|gb|CB972636.1|CB972636
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|110693433|gb|EE069670.1|EE069670
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|37183887|gb|CF603241.1|CF603241
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|37183616|gb|CF602970.1|CF602970
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|34547073|gb|CF515305.1|CF515305
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|30300759|gb|CB977553.1|CB977553
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|71874369|gb|DT023424.1|DT023424
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|30298116|gb|CB974910.1|CB974910
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTCTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|30305264|gb|CB982058.1|CB982058
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GACTTTTGAGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|34545434|gb|CF513666.1|CF513666
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|26266055|gb|CA817118.1|CA817118
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|110361145|gb|EC924598.1|EC924598
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|110408280|gb|EC973912.1|EC973912
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|30304172|gb|CB980966.1|CB980966
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|28962565|gb|CB341598.1|CB341598
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|30296486|gb|CB973280.1|CB973280
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|110422416|gb|EC988740.1|EC988740
EST:     GAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: GAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|30304643|gb|CB981437.1|CB981437
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|26261905|gb|CA812968.1|CA812968
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|30296126|gb|CB972920.1|CB972920
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAG
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAG
EST: gi|30299314|gb|CB976108.1|CB976108
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|110376672|gb|EC941739.1|EC941739
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|34545521|gb|CF513753.1|CF513753
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|29785029|gb|CB341669.2|CB341669
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|110729733|gb|EE106009.1|EE106009
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|26265385|gb|CA816448.1|CA816448
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|110409494|gb|EC975157.1|EC975157
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|30330541|gb|CD013803.1|CD013803
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|110375584|gb|EC940585.1|EC940585
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|33407577|gb|CF213204.1|CF213204
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|26265446|gb|CA816509.1|CA816509
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|110373668|gb|EC937924.1|EC937924
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|161706350|gb|FC056297.1|FC056297
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|33407550|gb|CF213177.1|CF213177
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|22007489|gb|BQ792523.1|BQ792523
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|26257583|gb|CA808646.1|CA808646
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
EST: gi|26257644|gb|CA808707.1|CA808707
EST:     CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATG                         GATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC
genomic: CAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacc ... ttttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACTTGGAGTGCTCAGCTGGCGATTAGATGCTGATAACTATGAAACAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacctaacttacttttttcattcagaaaaaggaaattgttctccaattctttcagtttgtgccttgaatttataccatagcctatagttaagtctgtataatataagtggaaatggatgtaaacattttctccag

- - - - - - - - - - - - - - - - - - - - - -  CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC