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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGCGCCGAGCGCGAACACCTCGCTTCGGTTGTCGGATCCGCCGTCAATGTCCGATCCGCCGGCGATATCATGACCTTGACGGCCGCCGCAGCCACAGgtagaatttaaaaataaaataagcttccatgaccatgtcgctttcaaaaaattgggcagttagtttgttgactgacggaagtgcccttgttggggctgcag

Basic information

species Vitis vinifera
transcript Vv05s0020g04020.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g04020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G00760.1 (Glycine max), 5'ss of exon 3
ATGGGCGCCGAGCGCGAACACCTCGCTTCGGTTGTCGGATCCGCCGTCAATGTCCGATCCGCCGGCGATATCATGACCTTGACGGCCGCCGCAGCCACAGgta-------gaatttaaaaataaaataagcttccatgaccatgtcgctttcaaaaaattgggcagttagtttgttgactgacggaagtgcccttgttggggctgcag
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ATGGGGGCCGAGCGCGACCACCTGGCCTCGGTGGTCAGCTCCGCCGTGAATGTGAGGTCCGCCGGTGACATCACGACGTTGACGGCAGCTGCGGCCACAGgtatgtgcatgacactgaaacaaatggaatttactttgatta-gttgaacatgaaaattttggtattatttgaatttaacta-gaatgtacataaatttaaa------