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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTAGTCATTGATGGAAAGCTTCAAAGTGCTGAGATTGATGAATTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttctttttctcttctatcgatggtttgagcggctgagaaagcttaaatcccatttctttttatcatactatggtgaagattctccataagctgatcatttttgtatgcattttcag

Basic information

species Vitis vinifera
transcript Vv05s0020g03200.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g03200.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G39440.1 (Glycine max), 5'ss of exon 3
GCTTTAGTCATTGATGGAAAGCTTCAAAGTGCTGAGATTGATGAATTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttctttttctcttctatcgatggtttgagcggctgagaaagcttaaatcccatttctttttatcatactatggtgaagattctccataagctgatcatttttgtatgcattttcag
||||| || ||||||||||||||||| ||||| ||||  |||||||| |||||||||||||  ||||| ||||| || || |||||  |||| | |||| || |||   ||  || | ||      |     ||   |    || ||  ||||| |  |||| ||  | |  | |   |  |   || ||      |||| |             
GCTTTGGTAATTGATGGAAAGCTTCAGAGTGCAGAGACAGATGAATTTATCTACCATGAATGTCTTGTTCATCCGGCTCTGCTTCACAATCCTAGgtacctcatttggactcttaacaataaaaaaaaata-tgttgagatgtagataacatttttaattattattttttcatta---tcttttgtatgcca--tgttttag-------------

upper sequence: Vv05s0020g03200.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G28340.1 (Glycine max), 5'ss of exon 3
GCTTTAGTCATTGATGGAAAGCTTCAAAGTGCTGAGATTGATGAATTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttctttttctcttctatcgatggtttgagcggctgagaaagcttaaatcccatttctttttatcatactatggtgaagattctccataagctgatcatttttgtatgcattttcag
||||| || ||||||||||||||||| ||||| ||||  |||||||| |||||||| || |  || || ||||| || || |||||  |||| | |||| || ||| | || ||| | ||      |    ||    | |  || ||  ||||| || ||||| |    |  | |   |  |   || ||      |||| |             
GCTTTGGTAATTGATGGAAAGCTTCAGAGTGCAGAGACAGATGAATTTATCTACCACGAGTGTCTAGTTCATCCGGCTCTGCTTCACAATCCTAGgtacctcatttgcactcctaacaataaa--aaatatcttgagatg--tagataacattttttattatcttttatttttcattctcttttgtatgcca--tgttttag-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352791045|gb|FQ480038.1|FQ480038
EST:     TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAA                         TCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
genomic: TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttcttt ... gcattttcagTCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
EST: gi|352786447|gb|FQ479056.1|FQ479056
EST:     TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAA                         TCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
genomic: TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttcttt ... gcattttcagTCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
EST: gi|351055343|gb|FQ441941.1|FQ441941
EST:     TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAA                         TCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
genomic: TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttcttt ... gcattttcagTCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
EST: gi|349822939|gb|FQ399918.1|FQ399918
EST:     TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAA                         TCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
genomic: TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttcttt ... gcattttcagTCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
EST: gi|351036339|gb|FQ458714.1|FQ458714
EST:     TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAA                         TCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
genomic: TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttcttt ... gcattttcagTCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
EST: gi|351039310|gb|FQ461177.1|FQ461177
EST:     TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAA                         TCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
genomic: TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttcttt ... gcattttcagTCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
EST: gi|351049434|gb|FQ450035.1|FQ450035
EST:     TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAA                         TCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
genomic: TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttcttt ... gcattttcagTCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
EST: gi|351051773|gb|FQ455187.1|FQ455187
EST:     TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAA                         TCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
genomic: TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttcttt ... gcattttcagTCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
EST: gi|351035817|gb|FQ463662.1|FQ463662
EST:     TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAA                         TCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
genomic: TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttcttt ... gcattttcagTCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
EST: gi|351038474|gb|FQ464340.1|FQ464340
EST:     TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAA                         TCCAAAGGGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
genomic: TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttcttt ... gcattttcagTCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
EST: gi|349824845|gb|FQ414703.1|FQ414703
EST:     TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAA                         TCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
genomic: TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttcttt ... gcattttcagTCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
EST: gi|351038444|gb|FQ464310.1|FQ464310
EST:     TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAA                         TCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
genomic: TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttcttt ... gcattttcagTCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
EST: gi|351034444|gb|FQ463257.1|FQ463257
EST:     TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAA                         TCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
genomic: TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttcttt ... gcattttcagTCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
EST: gi|351049225|gb|FQ449947.1|FQ449947
EST:     TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAA                         TCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
genomic: TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttcttt ... gcattttcagTCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
EST: gi|351048095|gb|FQ441267.1|FQ441267
EST:     TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAA                         TCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
genomic: TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttcttt ... gcattttcagTCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
EST: gi|351053780|gb|FQ441546.1|FQ441546
EST:     TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAA                         TCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
genomic: TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttcttt ... gcattttcagTCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
EST: gi|351037593|gb|FQ462576.1|FQ462576
EST:     TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAA                         TCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
genomic: TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttcttt ... gcattttcagTCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
EST: gi|351013942|gb|FQ434094.1|FQ434094
EST:     TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAA                         TCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
genomic: TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttcttt ... gcattttcagTCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
EST: gi|351048233|gb|FQ442203.1|FQ442203
EST:     TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAA                         TCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
genomic: TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttcttt ... gcattttcagTCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
EST: gi|352793951|gb|FQ479193.1|FQ479193
EST:     TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAA                         TCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
genomic: TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttcttt ... gcattttcagTCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
EST: gi|351030375|gb|FQ432313.1|FQ432313
EST:     TTCATCCACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAA                         TCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
genomic: TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttcttt ... gcattttcagTCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
EST: gi|351032566|gb|FQ458931.1|FQ458931
EST:     TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAA                         TCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
genomic: TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttcttt ... gcattttcagTCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
EST: gi|351048148|gb|FQ442118.1|FQ442118
EST:     TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAA                         TCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
genomic: TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttcttt ... gcattttcagTCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
EST: gi|161715874|gb|FC067453.1|FC067453
EST:     TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAA                         TCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
genomic: TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttcttt ... gcattttcagTCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
EST: gi|351052302|gb|FQ455474.1|FQ455474
EST:     TTCATCCACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAA                         TCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
genomic: TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttcttt ... gcattttcagTCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
EST: gi|351031893|gb|FQ460150.1|FQ460150
EST:     TTCATCCACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAA                         TCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
genomic: TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttcttt ... gcattttcagTCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
EST: gi|351022726|gb|FQ428635.1|FQ428635
EST:     TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAA                         TCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
genomic: TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttcttt ... gcattttcagTCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
EST: gi|349815985|gb|FQ403626.1|FQ403626
EST:     TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAA                         TCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
genomic: TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttcttt ... gcattttcagTCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
EST: gi|351042120|gb|FQ456330.1|FQ456330
EST:     TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAA                         TCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
genomic: TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttcttt ... gcattttcagTCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
EST: gi|351031200|gb|FQ445027.1|FQ445027
EST:     TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAA                         TCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
genomic: TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttcttt ... gcattttcagTCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
EST: gi|351039295|gb|FQ461162.1|FQ461162
EST:     TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAA                         TCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
genomic: TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttcttt ... gcattttcagTCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
EST: gi|351047673|gb|FQ455070.1|FQ455070
EST:     TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAA                         TCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA
genomic: TTCATCTACCATGAATCCCTTGTCCATCCTGCACTTCTTCATCATCCAAAgtacttcttt ... gcattttcagTCCAAAGAGCATCTTCATCATGGGGGGAGGTGAAGGTTCCACTGCAAGAGA