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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTGCACAGTCTCCTTTGAGGCTTGTGAGTAGATTCCCTGATCATCCTGAAATTGGTACATTGCATGATAATTTTGTgtgagtatcgctctgtttatttggctaaattacaactgagttttgttacaattgtcaatgctagtttttatatttgactgcccatgtattttttgcatttagaaaattatctaaattatttcttccaacattttgaggatag

Basic information

species Vitis vinifera
transcript Vv05s0020g03080.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G28200.1 (Glycine max), 5'ss of exon 3
ATCTGCACAGTCTCCTTTGAGGCTTGTGAGTAGATTCCCTGATCATCCTGAAATTGGTACATTGCATGATAATTTTGTgtgagtatcgctc-tgtttatttggctaaattacaactgagttttgttacaattgtcaatgctagtttttatatttgactgcccat--gtattttttgcatttagaaaattatctaaattatttcttccaacatt-ttgaggatag
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ATCTGTACGATCTCCTCTGCAGCTGGTGACCAAGTTTCCTAATCATCCTGAAATTGGTACCATGCATGATAATTTTGTgtgagcatcactcctttttctatgaagagtttagctttgaacttcataa-gattgacaa-gcaatctctatcaacagtattttaattaaaaaaaaccatgcctaagaaattgat--atgtattttgtcaaactctgttaatgatag

upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G39540.1 (Glycine max), 5'ss of exon 3
ATCTGCACAGTCTCCTTTGAGGCTTGTGAGTAGATTCCCTGATCATCCTGAAATTGGTACATTGCATGATAATTTTGTgtgagtatcgctctgtttatttggctaaattacaactgagttttgttacaattgtcaatgctagtttttat-atttgactgcccatgtattttttgcatttagaaaattatctaaattatttcttccaacatt-ttgaggatag
||||| ||  |||||| ||  ||| ||||  |  || ||| |||||||||||||||||||  |||| |||||||||||||||| ||| |||  |||  |  ||  ||||     |     ||  ||  |||| |||   || |    || |   |  |    ||  |           ||  |||||     |  |||||  || |||  | || |  ||||
ATCTGTACGATCTCCTCTGCAGCTGGTGACCAAGTTTCCTAATCATCCTGAAATTGGTACCCTGCACGATAATTTTGTgtgagcatcactcctttttctgtgcagaatttagctttgaacttcataagattgacaag--taatcccaatcaacagtattttaataaaaaaacaatgcgtaagaaattgat--atgtattttgtcaaactctgttaataatag