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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCACAGGTCCATAGAGACAGTGGTGGACTACATACACACTAAATTAAATACAAACAAGACCCAGGTCTTTTTTCGTACATTCGCCCCTGTACATTTCAGgtttgtctcccaactgatcttctcattcaatgttgttgcattacacctcttcaagcctggctggcacaagcttttaatttctttgaacttccagttcctggaacagagatgagttatagagagttacatgaatatcccatggagctaaactaatagaagatgtatttatttttctttcacag

Basic information

species Vitis vinifera
transcript Vv05s0020g02810.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g02810.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G19160.1 (Arabidopsis thaliana), 5'ss of exon 3
ATCACAGGTCCATAGAGACAGTGGTGGACTACATACACACTAAATTAAATACAAACAAGACCCAGGTCTTTTTTCGTACATTCGCCCCTGTACATTTCAGgtttgtctcccaactgatcttctcattcaatgttgttgcattacacctcttcaagcctggctggcacaagcttttaatttctttgaacttccagttcctggaacagagatgagttatagagagttacatgaatatcccatggagctaaactaatagaagatgtatttatttttctttcacag
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ATAGACGAGCTATGAAGACTGTAATGAAATGGATACAAGAAGAGGTTGATGCAAACAAGACACAGGTTTTCTTTCGGACATTTGCCCCTGTGCATTTCAGgttggtcacacat---atctccaaaacaagaatcttcg----atgaatcttaaagctccttttaattgatgttttcttgtattcag------------------------------------------------------------------------------------------------