1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGCTGTTGCTTACATTCCTCTGACAGTCCTGGCAGTTCCAGCTTCAGTACTTACTgtaagcattaaaaatccatttctaatgcttttagatcctggttaccgctttttgtttcataaataagtgctcattttgcaaagttctagtttgtagctgc...
species | Vitis vinifera |
transcript | Vv05s0020g02660.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGCTTACATTCCTCTGACAGTCCTGGCAGTTCCAGCTTCAGTACTTACT CTTGGTGGTGGCTATCTTTTTGGGTTGCCTGTGGGCTTTGTTGCCGATTCAEST: gi|110712641|gb|EE087866.1|EE087866
genomic: TTGCTTACATTCCTCTGACAGTCCTGGCAGTTCCAGCTTCAGTACTTACTgtaagcatta ... tatcttccagCTTGGTGGTGGCTATCTTTTTGGGTTGCCTGTGGGCTTTGTTGCCGATTCA
EST: TTGCTTACATTCCTCTGACAGTCCTAGCAGTTCCAGCTTCAGTACTTACT CTTGGTGATGGCTATCTTTTTGGGTTGCCTGTGGGCTTTGTTGCCGATTCAEST: gi|110702350|gb|EE080962.1|EE080962
genomic: TTGCTTACATTCCTCTGACAGTCCTGGCAGTTCCAGCTTCAGTACTTACTgtaagcatta ... tatcttccagCTTGGTGGTGGCTATCTTTTTGGGTTGCCTGTGGGCTTTGTTGCCGATTCA
EST: TTGCTTACATTCCTCTGACAGTCCTAGCAGTTCCAGCTTCAGTACTTACT CTTGGTGGTGGCTATCTTTTTGGGTTGCCTGTGGGCTTTGTTGCCGATTCAEST: gi|71862736|gb|DT011791.1|DT011791
genomic: TTGCTTACATTCCTCTGACAGTCCTGGCAGTTCCAGCTTCAGTACTTACTgtaagcatta ... tatcttccagCTTGGTGGTGGCTATCTTTTTGGGTTGCCTGTGGGCTTTGTTGCCGATTCA
EST: TTGCTTACATTCCTCTGACAGTCCTAGCAGTTCCAGCTTCAGTACTTACT CTTGGTGGTGGCTATCTTTTTGGGTTGCCTGEST: gi|110708978|gb|EE084046.1|EE084046
genomic: TTGCTTACATTCCTCTGACAGTCCTGGCAGTTCCAGCTTCAGTACTTACTgtaagcatta ... tatcttccagCTTGGTGGTGGCTATCTTTTTGGGTTGCCTG
EST: TTGCTTACATTCCTCTGACAGTCCTAGCAGTTCCAGCTTCAGTACTTACT CTTGGTGGTGGCTATCTTTTTGGGTTGCCTGTGGGCTTTGTTGCCGATTCAEST: gi|161716468|gb|FC068440.1|FC068440
genomic: TTGCTTACATTCCTCTGACAGTCCTGGCAGTTCCAGCTTCAGTACTTACTgtaagcatta ... tatcttccagCTTGGTGGTGGCTATCTTTTTGGGTTGCCTGTGGGCTTTGTTGCCGATTCA
EST: TTGCTTACATTCCTCTGACAGTCCTAGCAGTTCCAGCTTCAGTACTTACT CTTGGTGGTGGCTATCTTTTTGGGTTGCCTGTGGGCTTTGTTGCCGATTCAEST: gi|110416216|gb|EC982180.1|EC982180
genomic: TTGCTTACATTCCTCTGACAGTCCTGGCAGTTCCAGCTTCAGTACTTACTgtaagcatta ... tatcttccagCTTGGTGGTGGCTATCTTTTTGGGTTGCCTGTGGGCTTTGTTGCCGATTCA
EST: TTGCTTACATTCCTCTGACAGTCCTGGCAGTTCCAGCTTCAGTACTTACT CTTGGTGGTGGCTATCTTTTTGGGTTGCCTGTGGGCTTTGTTGCCGATTCAEST: gi|37185008|gb|CF604361.1|CF604361
genomic: TTGCTTACATTCCTCTGACAGTCCTGGCAGTTCCAGCTTCAGTACTTACTgtaagcatta ... tatcttccagCTTGGTGGTGGCTATCTTTTTGGGTTGCCTGTGGGCTTTGTTGCCGATTCA
EST: TTGCTTACATTCCTCTGACAGTCCTGGCAGTTCCAGCTTCAGTACTTACT CTTGGTGGTGGCTATCTTTTTGGGTTGCCTGTGGGCTTTGTTGCCGATTCAEST: gi|161717253|gb|FC067259.1|FC067259
genomic: TTGCTTACATTCCTCTGACAGTCCTGGCAGTTCCAGCTTCAGTACTTACTgtaagcatta ... tatcttccagCTTGGTGGTGGCTATCTTTTTGGGTTGCCTGTGGGCTTTGTTGCCGATTCA
EST: TTGCTTACATTCCTCTGACAGTCCTGGCAGTTCCAGCTTCAGTACTTACT CTTGGTGGTGGCTATCTTTTTGGGTTGCCTGTGGGCTTTGTTGCCGATTCAEST: gi|294963976|gb|GW836851.1|GW836851
genomic: TTGCTTACATTCCTCTGACAGTCCTGGCAGTTCCAGCTTCAGTACTTACTgtaagcatta ... tatcttccagCTTGGTGGTGGCTATCTTTTTGGGTTGCCTGTGGGCTTTGTTGCCGATTCA
EST: TTGCTTACATTCCTCTGACAGTCCTAGCAGTTCCAGCTTCAGTACTTACT CTTGGTGGTGGCTATCTTTTGGGGTTGCCTGTGGGCTTTGTTGCCGATTCAEST: gi|37190020|gb|CF609369.1|CF609369
genomic: TTGCTTACATTCCTCTGACAGTCCTGGCAGTTCCAGCTTCAGTACTTACTgtaagcatta ... tatcttccagCTTGGTGGTGGCTATCTTTTTGGGTTGCCTGTGGGCTTTGTTGCCGATTCA
EST: TTGCTTACATTCCTCTGACAGTCCTGGCAGTTCCAGCTTCAGTACTTACT CTTGGTGGTGGCTATCTTTTTGGGTTGCCTGTGGGCTTTGTTGCCGATTCAEST: gi|161713899|gb|FC062577.1|FC062577
genomic: TTGCTTACATTCCTCTGACAGTCCTGGCAGTTCCAGCTTCAGTACTTACTgtaagcatta ... tatcttccagCTTGGTGGTGGCTATCTTTTTGGGTTGCCTGTGGGCTTTGTTGCCGATTCA
EST: TTGCTTACATTCCTCTGACAGTCCTAGCAGTTCCAGCTTCAGTACTTACT CTTGGTGGTGGCTATCTTTTTGGGTTGCCTGTGGGCTTTGTTGCCGATTCA
genomic: TTGCTTACATTCCTCTGACAGTCCTGGCAGTTCCAGCTTCAGTACTTACTgtaagcatta ... tatcttccagCTTGGTGGTGGCTATCTTTTTGGGTTGCCTGTGGGCTTTGTTGCCGATTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTGTTGCTTACATTCCTCTGACAGTCCTGGCAGTTCCAGCTTCAGTACTTACTgtaagcattaaaaatccatttctaatgcttttagatcctggttaccgctttttgtttcataaataagtgctcattttgcaaagttctagtttgtagctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataag