Sequence
atgc intronic sequence ATGC exonic sequenceCCAAACCTTGTTAACTTGATTGGTTATTGTGCTGATGGGGACCAACGTCTGCTTGTCTATGAGTTTATGCCATTGGGATCATTGGAGGATCATTTACATGgttagattgcctgccttttgtgcactagttattaacccataaataacaaaagacagttttgctattttttgcatgtagatcaaccatgctgtcatttgat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g01770.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os05g30870.1 (Oryza sativa), 5'ss of exon 3
CCAAACCTTGTTAACTTGATTGGTTATTGTGCTGATGGGGACCAACGTCTGCTTGTCTATGAGTTTATGCCATTGGGATCATTGGAGGATCATTTACATGgttagattgcctgccttttgtgc--actagttattaacccataaata-acaaaagacagttttgctattttttgcatgtag-atcaaccatgctgtcatttgat
||||| |||||| | ||||| || |||||||||||||| |||||||| ||||| |||||||||||||||||||||||| | ||||||||||| |||||| | |||| || | | | | | || || || | | | | | | | ||||| | || | ||||| || || |
GATAACCTGGTTAACCTAATTGGATACTGTGCTGATGGGGATCAACGTCTCCTTGTATATGAGTTTATGCCATTGGGATCACTTGAGGATCATTTGCATGgtaaatttgctactctactacactcatgaactcctattgtatttgtatgcctatgtcctgtatattcaaagacacatgtggcattatacatgcagt-atct---
upper sequence: Vv05s0020g01770.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os01g71000.1 (Oryza sativa), 5'ss of exon 3
CCAAACCTTGTTAACTTGATTGGTTATTGTGCTGATGGGGACCAACGTCTGCTTGTCTATGAGTTTATGCCATTGGGATCATTGGAGGATCATTTACATGgttagattgcctgccttttgtgcactagttattaacccataaataacaaaagacagtttt-gctattttttgcatgtagatcaaccatgctgtcatttgat----
| ||||| || || | ||||| |||||||||||||| ||||| || || |||||||||||||||||||||||||||||| |||| || ||||| ||||||| | | || | ||| || | | || | | | | || || || | | |||| || | | | |
ACTAACCTGGTCAATCTAATTGGCTATTGTGCTGATGGTGACCAGCGCCTTCTTGTCTATGAGTTTATGCCATTGGGATCACTGGAAGACCATTTGCATGgtttgtctatcttctccttgcct-----ttctagtcttgcaagagtccatgggcgcttgaagcaatgtacataaagtagtagtactgcattattgtgaagtacta
upper sequence: Vv05s0020g01770.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G140590_T06 (Zea mays), 5'ss of exon 2
CCAAACCTTGTTAACTTGATTGGTTATTGTGCTGATGGGGACCAACGTCTGCTTGTCTATGAGTTTATGCCATTGGGATCATTGGAGGATCATTTACATGgttagattgcctgccttttgtgcactagttattaacccataaataacaaaagacagttttgctattttttgcatgtagatcaaccatgct---gtcatttgat
|| || || ||||| ||||| || || |||||||| ||||||||||| ||||| || ||||||||||||||||||||| | ||||||||||| |||||| || |||| || | | | ||| ||| || || ||||| ||| | || | | | || | | | || | |
GACAATCTAGTAAACTTAATTGGATACTGCGCTGATGGAGACCAACGTCTTCTTGTATACGAGTTTATGCCATTGGGATCACTTGAGGATCATTTGCATGgtaagtttgctacaattatcaatatttattactaagacacttatcttgaaaga--gttctattaaatagcttcaatcaacaaatcttttctgagaaatctaa-
upper sequence: Vv05s0020g01770.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G145709_T01 (Zea mays), 5'ss of exon 3
CCAAACCTTGTTAACTTGATTGGTTATTGTGCTGATGGGGACCAACGTCTGCTTGTCTATGAGTTTATGCCATTGGGATCATTGGAGGATCATTTACATGgttagattgcctgccttttgtgcactagttattaacccataaataacaaaagacagttttgctattttttgca-tgtagatcaaccatgctgtcatttgat---
| ||||| || || | ||||| || ||||||||||| |||||||| || ||||| |||||||||||||||||||| ||| | || |||||| | |||||| | | || | ||||| | || | || | || || || | | || || | || | | | | | | || ||
ACTAACCTGGTCAATCTAATTGGCTACTGTGCTGATGGTGACCAACGCCTTCTTGTTTATGAGTTTATGCCATTGGGGTCACTAGAAGATCATCTGCATGgtctgtgtatctcctctttgt----catatactcttccgaatattccatgagtgcctgtagcaatgtaatgaagcattgtcttattctataggaatgacatgct
upper sequence: Vv05s0020g01770.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G037585_T01 (Zea mays), 5'ss of exon 3
CCAAACCTTGTTAACTTGATTGGTTATTGTGCTGATGGGGACCAACGTCTGCTTGTCTATGAGTTTATGCCATTGGGATCATTGGAGGATCATTTACATGgttagattgcctgccttttgtgcactagtt-----attaacccataaataacaaaagacagttttgctattttttgcatgtagatcaaccatgctgtcatttgat
| ||||| || || | ||||| || |||||||| || |||||||| || ||||| |||||||||||||||||||| ||| | || |||||| | ||||||| | | || | ||||| ||||| | || |||| | | | || | || || || || | || | || || ||
ACTAACCTGGTCAATCTAATTGGCTACTGTGCTGACGGTGACCAACGCCTTCTTGTTTATGAGTTTATGCCATTGGGGTCACTAGAAGATCATCTGCATGgtttgtgtatctcctctttgtcatctagtctccggaatattccatgagtgcctgtag-ctgtaatgaagcattgtgttattctat-aggagtggcgtgcttc---
upper sequence: Vv05s0020g01770.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G074381_T01 (Zea mays), 5'ss of exon 3
CCAAACCTTGTTAACTTGATTGGTTATTGTGCTGATGGGGACCAACGTCTGCTTGTCTATGAGTTTATGCCATTGGGATCATTGGAGGATCATTTACATGgttag-----attgcctgccttttgtgcacta-gttattaac-ccataaataacaaaagacagttttgctattttttgcatgtagatcaaccatgctgtcatttgat
|| || ||||| || || ||| || |||| |||||| || ||||| |||| || ||||||| |||||||||||||||| | || |||||| ||||||||||| || || || || | | | | | | ||| | ||| || | | | | ||||||| | || || |||| |
CCTAATCTTGTCAATCTGCATGGGTACTGTGTTGATGGCGATCAACGCTTGCTCGTTTATGAGTATATGCCATTGGGATCACTAGAAGATCATCTACATGgttagttactgttttatgttttaaatgtatgatatcctcagcaccaggagcaacttaaattatcctacttgtaatttgcatttca--taataatactgttaa-----
upper sequence: Vv05s0020g01770.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G28730.1 (Glycine max), 5'ss of exon 3
CCAAACCTTGTTAACTTGATTGGTTATTGTGCTGATGGGGACCAACGTCTGCTTGTCTATGAGTTTATGCCATTGGGATCATTGGAGGATCATTTACATGgttagattgcctgccttttgtgcactagttattaacccataaataacaaaagacagttttgctattttttgcatgtaga----tcaaccatgctgtcatttgat-
||||| ||||| ||||| |||||||||||||||||||| || || || |||||||| ||||| || |||||||||||||| ||||||||||||||||||||| ||||||| | | |||| | || | | ||| | | | ||| |||| | | || | | || | ||| ||
CCAAATCTTGTGAACTTAATTGGTTATTGTGCTGATGGTGATCAGCGGCTGCTTGTTTATGAATTCATGCCATTGGGATCTTTGGAGGATCATTTACATGgtcagattgcattcttttttaactgatacctttgcttcttcaattatagt-----gctttcatattataaagctataaaatatttaatttcatgttgattcaatc
upper sequence: Vv05s0020g01770.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA15G10360.1 (Glycine max), 5'ss of exon 3
CCAAACCTTGTTAACTTGATTGGTTATTGTGCTGATGGGGACCAACGTCTGCTTGTCTATGAGTTTATGCCATTGGGATCATTGGAGGATCATTTACATGgttagattgcctgccttttgtgcactagttattaacccataaataacaaaagacagttttgctattttttgcatgtaga---tcaaccatgctgtcatttgat--
||||| ||||| ||||| ||||| |||||||||||||| || || || |||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||| ||||||| | | |||| | | || | | || | | ||| |||| | | || | | || | ||| |||| |
CCAAATCTTGTGAACTTAATTGGCTATTGTGCTGATGGTGATCAGCGGCTGCTTGTTTATGAATTTATGCCATTGGGATCTTTGGAGGATCATTTACACGgtcagattgctttcttttttaactgatatctttgcttcttcaactattgt-----gctttcatattataaaactataaaatattaaatttcatgttatttcaatc
upper sequence: Vv05s0020g01770.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G18610.1 (Arabidopsis thaliana), 5'ss of exon 4
CCAAACCTTGTTAACTTGATTGGTTATTGTGCTGATGGGGACCAACGTCTGCTTGTCTATGAGTTTATGCCATTGGGATCATTGGAGGATCATTTACATGgttagattgcctgccttttgtgcactagttattaacccataaataacaaaagacagttttgctattttttgcatgtagatc-aaccatgctgtcatttgat
|| || ||||| || ||||||||||||||||||||||||||||| ||||| ||||| ||||||| ||||||| | |||||||||||||||||| |||| ||| | || || ||| |||| | | | || | | | | | ||||||| | || | | | | ||
CCCAATCTTGTGAATTTGATTGGTTATTGTGCTGATGGGGACCAGCGTCTTCTTGTGTATGAGTATATGCCACTAGGATCATTGGAGGATCATCTACACGgtatgcttag-tgatatttccccactcttaacatggaattgcattattttccataagataagaaacctttgcatttttatttgaaactaccatggaccgaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30302616|gb|CB979410.1|CB979410EST: GCTTGTCTATGAGTTTATGCCATTGGGATCATTGGAGGATCATTTACATG ATCTTCCACCAGACAAGGAGCCTCTGGACTGGAACACAAGGATGAAGATTG
genomic: GCTTGTCTATGAGTTTATGCCATTGGGATCATTGGAGGATCATTTACATGgttagattgc ... ctgtcttcagATCTTCCACCAGACAAGGAGCCTCTGGACTGGAACACAAGGATGAAGATTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCAAACCTTGTTAACTTGATTGGTTATTGTGCTGATGGGGACCAACGTCTGCTTGTCTATGAGTTTATGCCATTGGGATCATTGGAGGATCATTTACATGgttagattgcctgccttttgtgcactagttattaacccataaataacaaaagacagttttgctattttttgcatgtagatcaaccatgctgtcatttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaa