1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TCTATGTGATCATCCTGATGATCCCTCAGTAATTGTTGGTGGGAGAGTAAAAGGAAAATTGAAGGTTACTCGTGCATTGGGAGTTGGTTACCTGAAACAGgttagtatattttattttgataggcccctgtattaggccaacaaacattatattccagatcatagcttgcgattatgtttctgaggataattaacaatta...
species | Vitis vinifera |
transcript | Vv05s0020g01460.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAGGAAAATTGAAGGTTACTCGTGCATTGGGAGTTGGTTACCTGAAACAG AAAAAACTGAATGATGCTTTGATGGGTATTCTTCGAGTTCGTAACCTCTTAEST: gi|27583301|gb|CB005996.1|CB005996
genomic: AAGGAAAATTGAAGGTTACTCGTGCATTGGGAGTTGGTTACCTGAAACAGgttagtatat ... ctttctgcagAAAAAACTGAATGATGCTTTGATGGGTATTCTTCGAGTTCGGAACCTCTTA
EST: AAGGAAAATTGAAGGTTACTCGTGCATTGGGAGTTGGTTACCTGAAACAG AAAAAACTGAATGATGCTTTGATGGGTATTCTTCGAGTTCGGAACCTCTTAEST: gi|71871282|gb|DT020337.1|DT020337
genomic: AAGGAAAATTGAAGGTTACTCGTGCATTGGGAGTTGGTTACCTGAAACAGgttagtatat ... ctttctgcagAAAAAACTGAATGATGCTTTGATGGGTATTCTTCGAGTTCGGAACCTCTTA
EST: AAGGAAAATTGAAGGTTACTCGTGCATTGGGAGTTGGTTACCTGAAACAG AAAAAACTGAATGATGCTTTGATGGGTATTCTTCGAGTTCGTAACCTCTTAEST: gi|110417760|gb|EC983841.1|EC983841
genomic: AAGGAAAATTGAAGGTTACTCGTGCATTGGGAGTTGGTTACCTGAAACAGgttagtatat ... ctttctgcagAAAAAACTGAATGATGCTTTGATGGGTATTCTTCGAGTTCGGAACCTCTTA
EST: AAGGAAAATTGAAGGTTACTCGTGCATTGGGAGTTGGTTACCTGAAACAG AAAAAACTGAATGATGCTTTGATGGGTATTCTTCGAGTTCGTAACCTCTTAEST: gi|110363321|gb|EC926899.1|EC926899
genomic: AAGGAAAATTGAAGGTTACTCGTGCATTGGGAGTTGGTTACCTGAAACAGgttagtatat ... ctttctgcagAAAAAACTGAATGATGCTTTGATGGGTATTCTTCGAGTTCGGAACCTCTTA
EST: AAGGAAAATTGAAGGTTACTCGTGCATTGGGAGTTGGTTACCTGAAACAG AAAAAACTGAATGATGCTTTGATGGGTATTCTTCGAGTTCGGAACCTCTTA
genomic: AAGGAAAATTGAAGGTTACTCGTGCATTGGGAGTTGGTTACCTGAAACAGgttagtatat ... ctttctgcagAAAAAACTGAATGATGCTTTGATGGGTATTCTTCGAGTTCGGAACCTCTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTATGTGATCATCCTGATGATCCCTCAGTAATTGTTGGTGGGAGAGTAAAAGGAAAATTGAAGGTTACTCGTGCATTGGGAGTTGGTTACCTGAAACAGgttagtatattttattttgataggcccctgtattaggccaacaaacattatattccagatcatagcttgcgattatgtttctgaggataattaacaatta
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggataa